FMO02631.5prime Sequence
1237 bp (6 high quality bases) assembled on 2008-05-23
> FMO02631.5prime
CAATCCACTTGTTTGGAGCCAGAATCGGAATCGGAAAGCTTGGGCCGTGT
GTGGCCCTAGTTGCGATTCTACAGCTACTCCAGTACACACAGCCGGCCGA
TGCCGCCGGAGCCGTGCCCCTGACCAGTGATAATATCGATATGACCCTAG
CGTCTAATGAATTGGTTTTCCTTAATTTTTATGCGGAGTGGTTTCGGTTT
AGTAATATTTTAGCACCTATATTCGCGGAAGCTGCAGATAAGATTAAAGA
GGAGTTTCCAGAGGCTGGAAAAATGGTGCTAGGCAAGGTCGATTGCCACA
AGGAAACGGCCATCGCGTCCCGTTTCCCCATAAACGCGTATCCAACATTG
AAAATTGTACGCAATGGGCAGCTCATCAAGCGCGAATACCGAGGACAGCG
TTCATCCGAAGCGTTCCTCGAGTTCATCAAGAACCATCTGGAGGATCCCA
TTCAGGATTTCAAATCCCTGAAGGATCTGGAGAACCTGGACTCGAATAAG
CGCCTCATTCTGGGCTACTTCGATCGTAGGGACCAGCCAGAGTACGACAT
ATTCCGCAAGGTGGCGACAAATCTGAAGGAAGACTGCCAGTTCCACGTGG
GCTTCGGAGATGCCGCCCAAGCCATGCATACAACAGGAACACCTATCATA
GTATTTACACCTGATGTATCTCTGTCTCATGAGAACGATGAGACCTACAC
TGGCAGCCTACAAAATTTTCGATGAGCTCAAAATTTGGGTCCAAGAGAAG
TGTGTACCCCTGGTGCGTGAAATAACATTTGAGAATGCAAAGGAACTTAC
GGAGGAGGGTCTGCCGTTCCTAATTCTCTTCCACCACCCAACCGATCATA
ATTCTATCAAGGATTAACAGTCGATCATTGAGCGTCATTTGCTGGATGAG
AACAGAACGTCAACTCTTTGAAACGCCGATGGCAACGATTCGCGTATCAT
CTGCACATCTAGGCAAATCCGATGATGACTGCCCTTGATGCAATCGACTC
GTTCAAGCACTGCATCTGTTCCCCCACTTCATTGAACTTGTACTCGACGG
GAAGACTGAGACAGTCCTTTCCGGATTTCTACCGGGGACAAGCTTCGACG
GTCATTTCTTCCGGCTCGGTACTCTCGAATGCATTGAACCTGATCCATCA
CTGGTCATTGTTCAGGTCCCCTCTCCGAGTTTATTGTCAGAGAAAGACGT
GTGTGAACCTATACTCACAGACATCACACTGCGTATA
FMO02631.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-RA | 1503 | CG9911-RA | 223..1309 | 10..1094 | 4485 | 94.8 | Plus |
| CG9911-RB | 1426 | CG9911-RB | 146..1232 | 10..1094 | 4485 | 94.8 | Plus |
| CG9911-RD | 1477 | CG9911-RD | 197..1283 | 10..1094 | 4485 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16294724..16295120 | 637..241 | 1760 | 96.2 | Minus |
| X | 23542271 | X | 16294390..16294658 | 902..633 | 1180 | 96.7 | Minus |
| X | 23542271 | X | 16295223..16295316 | 242..149 | 455 | 98.9 | Minus |
| X | 23542271 | X | 16296047..16296132 | 150..65 | 415 | 98.8 | Minus |
| X | 23542271 | X | 16296310..16296365 | 65..10 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:21:51 has no hits.
FMO02631.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:50 Download gff for
FMO02631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RA | 198..1246 | 10..1054 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:11 Download gff for
FMO02631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 197..1245 | 10..1054 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:04 Download gff for
FMO02631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 197..1245 | 10..1054 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:04 Download gff for
FMO02631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16294725..16295118 | 243..636 | 96 | <- | Minus |
| X | 16295223..16295314 | 151..242 | 98 | <- | Minus |
| X | 16296047..16296131 | 66..150 | 98 | <- | Minus |
| X | 16296310..16296365 | 10..65 | 100 | | Minus |
| X | 16294388..16294654 | 637..903 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:11 Download gff for
FMO02631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16188421..16188687 | 637..903 | 96 | <- | Minus |
| arm_X | 16188758..16189151 | 243..636 | 96 | <- | Minus |
| arm_X | 16189256..16189347 | 151..242 | 98 | <- | Minus |
| arm_X | 16190080..16190164 | 66..150 | 98 | <- | Minus |
| arm_X | 16190343..16190398 | 10..65 | 100 | | Minus |
