FMO02632.5prime Sequence
1208 bp (1033 high quality bases) assembled on 2008-05-23
> FMO02632.5prime
CAGTCGACATGGCGTCCAAGGAAAACATTGCTGACAACATGGAGAAGTTC
TCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACCAACAACGT
TCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGCCAAGGAGT
CCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCATGGAGAAG
TCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGCGAGAATCC
CCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTGGCAGATGT
ACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGGATTTGTCC
AAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGCCATTTCAT
CTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGTAAACGAGA
ACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGTTGC
TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAG
TGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGAGTACCTGT
TTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCC
CTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGCATCATCGC
CTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCTTCCATTT
TCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCTCCAACGAG
CTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTT
CCAACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCC
GCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCCTGCCCGTC
AATTTGATTGGCATGAATGCGACCTGATGTCCCAGTACATTGAGTTCGTA
GCGGACCGTTTGCTCGTGAGTGGCGTTGAAAGATCTTACACACCAAAACC
CTTTACTTCATGGAAATGATATCGCTGGATGAAGACCACTTTTTTGAAAA
GAGGGGGGGAGTACAGGCATGGAATGTCCGCACCCCTGGCACACCGGTTC
CTGGACGATCCAGCTTCCAACATTCTTGGCGCCGGGGCCAGGTAGAGTGT
CCTATACC
FMO02632.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrS-RA | 1593 | CG8975-RA | 128..1246 | 9..1114 | 5225 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11983530..11984312 | 1081..307 | 3530 | 98.2 | Minus |
| 2R | 25286936 | 2R | 11984818..11985069 | 309..58 | 1260 | 100 | Minus |
| 2R | 25286936 | 2R | 11985216..11985266 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:15 has no hits.
FMO02632.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:51 Download gff for
FMO02632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8975-RA | 170..1285 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:51 Download gff for
FMO02632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 120..1235 | 1..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:12 Download gff for
FMO02632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 120..1235 | 1..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:12 Download gff for
FMO02632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11983530..11984310 | 309..1081 | 98 | <- | Minus |
| 2R | 11984819..11985067 | 60..308 | 100 | <- | Minus |
| 2R | 11985216..11985271 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:51 Download gff for
FMO02632.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7872721..7872776 | 1..59 | 93 | | Minus |
| arm_2R | 7871035..7871815 | 309..1081 | 98 | <- | Minus |
| arm_2R | 7872324..7872572 | 60..308 | 100 | <- | Minus |
