FMO02633.5prime Sequence
979 bp (979 high quality bases) assembled on 2008-05-23
> FMO02633.5prime
CAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTCACTCCACG
CGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAGAAGAGTGC
CCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAATTGCAAGA
AGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAAAGTGGCTG
CACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAGGTCGCAGA
TCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGGAAACCGGG
GCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCAGGAACGAT
ACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTGCAATACAC
GGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTTTGATGCGG
ACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGGGCGACCAC
CTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATCCGGCGCGC
ATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTACGCCCATC
CCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGGTGGGCAAG
TACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTGGACTTTGA
GTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCCGACAAAGA
TCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACGATGAGACG
TGCCTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACGGTGGGCGA
GGCTTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCGCTTCGAGT
GCGGAGAGCACACGGAACGCAGCCTGAAGCGATCATTCGCTCGCAGCACC
AGAGCAGCAATGCAAGCTTTCTAGATCAT
FMO02633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6412-RA | 1526 | CG6412-RA | 439..1392 | 9..961 | 4730 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17499402..17499931 | 961..433 | 2585 | 99.6 | Minus |
| 2L | 23513712 | 2L | 17500035..17500284 | 434..185 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 17500491..17500668 | 186..9 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:43 has no hits.
FMO02633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:52 Download gff for
FMO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 442..1400 | 9..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:17 Download gff for
FMO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 439..1397 | 9..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:52 Download gff for
FMO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6412-RA | 439..1397 | 9..968 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:52 Download gff for
FMO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17499397..17499929 | 435..968 | 99 | <- | Minus |
| 2L | 17500035..17500283 | 186..434 | 100 | <- | Minus |
| 2L | 17500492..17500668 | 9..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:17 Download gff for
FMO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17499397..17499929 | 435..968 | 99 | <- | Minus |
| arm_2L | 17500035..17500283 | 186..434 | 100 | <- | Minus |
| arm_2L | 17500492..17500668 | 9..185 | 100 | | Minus |
