FMO02636.5prime Sequence
1229 bp (1007 high quality bases) assembled on 2008-05-23
> FMO02636.5prime
CAGTCGACATGAGGCCAATCTATCACCAGGAGCCGCCGCTCTTCTACCAG
CGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACCGTCTACGG
ACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACCCGTGTATC
CAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAACGGGCCCCA
TATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGACAGCGATTT
TCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCGAGTTCCGC
TGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATGCGTTGGGT
CGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTCTCCTTCAA
CACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCCTCGCACTT
GTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCGGCACCCTG
TACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGATGTCAAGGA
ATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTTTCACCTGCA
TAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTCTACTACGAG
GTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCACAAAGGGCAG
TTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGCGCCACGAA
CAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAAGCGCGGCTATTCGG
CGGTCCTGCAGCTGGGCCTCCAGGGAGTAAACTTATGCCACCAATGTCTT
CATGCAGACGGCCATCAAGACCTACGCGCTGACTACGGCGCCATCTGGCC
ATGGACGCGGCCTGCAAAACTCCCATTCCGGCCGATGGAGCTGTACAGGG
CCAGGATACGATGGACAGCACGGAAAACTGGCTGCCGCGAGCCAGTTCCT
TGAGCAGCATCGAGAGCTACACCGAGACGATCTACGAGCCGAGGACCGAG
ACCAGCGACTGGTTAATCGGAAAGGTTAGCGAGGAGGCGGAGTTCAATGA
TGAATCCTGGGGCGATGCCCGACAGCCCGTCTTCGGTACATGCCCGCTCC
GGAAGCCAACTCAGTCTGGCGTCCTACCTGTCAAGGTCTCGGCAACGCCG
GCCCAACCCATCATGATTTTTTTGAGGGT
FMO02636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-RD | 1573 | CG42678-RD | 73..1216 | 8..1155 | 5265 | 97.8 | Plus |
| CG42678-RO | 1321 | CG42678-RO | 73..931 | 8..869 | 4160 | 99.2 | Plus |
| CG42678-RR | 1863 | CG42678-RR | 73..931 | 8..869 | 4160 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22926625..22927173 | 8..556 | 2730 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22927250..22927448 | 555..754 | 950 | 99.5 | Plus |
| 2R | 25286936 | 2R | 22929086..22929364 | 868..1146 | 945 | 94 | Plus |
| 2R | 25286936 | 2R | 22927513..22927629 | 751..869 | 435 | 95 | Plus |
Blast to na_te.dros performed 2014-11-28 19:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2369 | 167..218 | 125 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6823 | 168..218 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6889 | 168..218 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6927 | 171..223 | 112 | 67.9 | Plus |
FMO02636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:41 Download gff for
FMO02636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30193-RD | 843..2006 | 1..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:12 Download gff for
FMO02636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RD | 66..1229 | 1..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:44 Download gff for
FMO02636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RD | 66..1229 | 1..1166 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:44 Download gff for
FMO02636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22926618..22927171 | 1..554 | 99 | -> | Plus |
| 2R | 22927250..22927447 | 555..753 | 99 | -> | Plus |
| 2R | 22927516..22927629 | 754..869 | 95 | -> | Plus |
| 2R | 22929088..22929385 | 870..1166 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:12 Download gff for
FMO02636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18814141..18814694 | 1..554 | 99 | -> | Plus |
| arm_2R | 18814773..18814970 | 555..753 | 99 | -> | Plus |
| arm_2R | 18815039..18815152 | 754..869 | 95 | -> | Plus |
| arm_2R | 18816611..18816908 | 870..1166 | 92 | | Plus |
