FMO02637.5prime Sequence
1204 bp (1040 high quality bases) assembled on 2008-05-23
> FMO02637.5prime
CAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGCATCCTAAA
ATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAGGAGGAGGA
GAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGGGCCATATG
CGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCCTGTCTGGC
GAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAGTGCGTGCG
CACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATTGCGCGGGC
GTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGGAGTTTGAC
GAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCCCAGTCGAC
GTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTTAGAACGGG
AGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACTTCAAGCAC
AGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGAGCGGGGTT
GGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTGCGAGGGCA
ACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCCTCAACCTC
TGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCACCAGTATGT
GAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTTCCCAGACG
TCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAGCAGCTGGC
GACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGCGTGGCTAC
GTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCATACGCACAA
TTTACAAAATCCTCGTGCCTGGTGGCATTTGGGTGATCTCGGGCGCTGCT
GTACCATTTTAGCGACGTCAGCGGGCAACAGCATCGAGCCGGCTTTCGAG
GACCTTTGCATTATCATGAAAGCGTAAGATTCGTTATCGAAGATTCACGC
ACCGCATCGTTACCAGTACGCCAGACCGTTCTTCAATGAACAGAGCGAGT
ACCAAGTCTTTTCTGGACTGCGCAAGCCGATCTATTTGAGGACACGGCAG
CTAGCCTCAAGGACCACGATCTATTGTGCCCAAGCACACCCGAGAAGAAG
GAGG
FMO02637.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11596-RA | 1747 | CG11596-RA | 104..1251 | 9..1142 | 5265 | 98 | Plus |
| CG11596-RE | 1765 | CG11596-RE | 508..1276 | 388..1142 | 3370 | 97 | Plus |
| CG11596-RD | 1544 | CG11596-RD | 287..1055 | 388..1142 | 3370 | 97 | Plus |
| CG11596-RE | 1765 | CG11596-RE | 104..458 | 9..389 | 1495 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1929454..1929711 | 650..907 | 1290 | 100 | Plus |
| X | 23542271 | X | 1928333..1928581 | 142..390 | 1245 | 100 | Plus |
| X | 23542271 | X | 1929244..1929384 | 509..649 | 705 | 100 | Plus |
| X | 23542271 | X | 1927786..1927920 | 9..143 | 675 | 100 | Plus |
| X | 23542271 | X | 1929050..1929170 | 388..508 | 605 | 100 | Plus |
| X | 23542271 | X | 1929773..1929924 | 908..1054 | 485 | 94.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:27 has no hits.
FMO02637.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:56 Download gff for
FMO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RA | 81..1240 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:34 Download gff for
FMO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RA | 97..1256 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:53 Download gff for
FMO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11596-RA | 97..1256 | 1..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:53 Download gff for
FMO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1927779..1927919 | 1..142 | 97 | -> | Plus |
| X | 1928334..1928580 | 143..389 | 100 | -> | Plus |
| X | 1929052..1929170 | 390..508 | 100 | -> | Plus |
| X | 1929244..1929384 | 509..649 | 100 | -> | Plus |
| X | 1929454..1929711 | 650..907 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:34 Download gff for
FMO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1821812..1821952 | 1..142 | 97 | -> | Plus |
| arm_X | 1822367..1822613 | 143..389 | 100 | -> | Plus |
| arm_X | 1823085..1823203 | 390..508 | 100 | -> | Plus |
| arm_X | 1823277..1823417 | 509..649 | 100 | -> | Plus |
| arm_X | 1823487..1823744 | 650..907 | 100 | -> | Plus |
