FMO02639.5prime Sequence
1224 bp (1043 high quality bases) assembled on 2008-05-23
> FMO02639.5prime
CAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACATCCCCGAC
TCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCATCCGCCACA
GCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAACCTGAACC
AGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCGTTCCCGGC
TCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAACAGCAGTT
GCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGCCCAGCACA
AAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCAACGGCAGC
GGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGCAGTGCCGC
CGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCACGGCAAAT
CTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATGCGGCGCAG
GGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTGCTGCTGGA
CGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCAGTCCGGCT
ACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCTTCGACAGC
ATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTGCCTAATTG
TTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCGACTTCCCC
CAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATAACTATCAG
GCCCAGCAGCCCGATGAACTTTCGCTGACAAAGGGCACACGAATCCTCAT
CCTGGAGAAGTCCAACGATGGATGGTGGCGTGGACAGAGCGGCAATTCCG
TCGGCTGGTTCCCCAGCAACTACACAACGGAGGATTGTGATAACGACGGC
GAGATCCACAACCTACGCAATGGCCGAGAACGTGCTTGAATATTGGTGGT
CGCCGCTGTACAGCTTCACGTCAAACAACGACCAGGAGCTCTTCGTTCGA
GAAAGGGCGATCGCTTGAGAATCTGGATCGGGCCGGCCTTCGATCGAACT
GGTACAAAGCTCGCACATACAGGTAGTCGGTAGTTCCCAGCATTTATTCT
CCAAGATTGAACGCATTCTGCCAGCTCTATCTATGCAAGTCAAGACGGAA
CAGGCACAGTGAGGAGGAGGAAGA
FMO02639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dock-RD | 2825 | CG3727-RD | 771..1926 | 9..1163 | 5230 | 97.5 | Plus |
| dock-RC | 3583 | CG3727-RC | 619..1774 | 9..1163 | 5230 | 97.5 | Plus |
| dock-RB | 3618 | CG3727-RB | 654..1809 | 9..1163 | 5230 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 829536..829972 | 9..445 | 2185 | 100 | Plus |
| 2L | 23513712 | 2L | 830735..831076 | 647..989 | 1650 | 99.4 | Plus |
| 2L | 23513712 | 2L | 830144..830349 | 444..649 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 831181..831291 | 1004..1115 | 235 | 86.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 67..290 | 177 | 55.7 | Plus |
FMO02639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:00 Download gff for
FMO02639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3727-RC | 615..1734 | 1..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:00 Download gff for
FMO02639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dock-RB | 645..1764 | 1..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:48 Download gff for
FMO02639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dock-RB | 645..1764 | 1..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:48 Download gff for
FMO02639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 829527..829971 | 1..444 | 99 | -> | Plus |
| 2L | 830145..830349 | 445..649 | 100 | -> | Plus |
| 2L | 830738..831083 | 650..998 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:00 Download gff for
FMO02639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 829527..829971 | 1..444 | 99 | -> | Plus |
| arm_2L | 830145..830349 | 445..649 | 100 | -> | Plus |
| arm_2L | 830738..831083 | 650..998 | 98 | -> | Plus |
