FMO02643.5prime Sequence
1215 bp (1006 high quality bases) assembled on 2008-05-23
> FMO02643.5prime
CAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGTGGGCGGTC
TCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGGCGGGAAAT
GGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCATCGAGCGGG
GCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGGTTGCCGGC
CACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTGCCGGCCTC
GTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCCAGCCTTGA
AGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCGAACCGGAA
TTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGCCTGTGGGT
GCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGATCTATGGAG
CAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGTTGAGACGA
CACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTGGCCAATCT
GGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGCAGCCGATT
TGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGGAATCGTGG
CGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGTAACTTCAG
CATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGGACTGGCTC
TATCGAAGCCTCTGGAAACGGGCTATGCCACATTGTACTTCCATCCCCTC
TGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGTAACAGACC
CTGGCCACTTCGCCGATGATTTATCGAGATTCAAGTGCTGGGCTCCAGAG
GACCGACCACCCAGGCTGGAGCCGAGTCTTGGATCCGGATACCGGAGTCC
TATTTCTACGCCCTGCCCATCTGACGAGGTCGCTGCTGCGCACTGCCACA
GACTTTAGTCACAGTTCCAGAAGCCGCATCCACATGAACATGAACCTGCT
GTTCCCCATGACTTCAGGTGAATGATCAGACGTCTATGGTTCTTATCCAT
CAGCTACGGTTCAATCTACGAATGAACCTGTAAGCGCCGTCATAAACTCG
GATCCTGAACTGCCAGTTAAGAAGCCATGGAAGCTCAGCCGCGGTGAAAT
ATGTACAACTTTCAC
FMO02643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-b-RB | 1839 | CG17914-RB | 257..1435 | 6..1167 | 5000 | 96.3 | Plus |
| yellow-b-RA | 1659 | CG17914-RA | 77..1255 | 6..1167 | 5000 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16756968..16757742 | 273..1040 | 3340 | 98.1 | Plus |
| 2L | 23513712 | 2L | 16755696..16755963 | 6..273 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:57 has no hits.
FMO02643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:05 Download gff for
FMO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17914-RA | 72..1144 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:20 Download gff for
FMO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-b-RA | 72..1144 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:47 Download gff for
FMO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-b-RA | 72..1144 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:47 Download gff for
FMO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16755691..16755963 | 1..273 | 98 | -> | Plus |
| 2L | 16756969..16757760 | 274..1055 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:20 Download gff for
FMO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16755691..16755963 | 1..273 | 98 | -> | Plus |
| arm_2L | 16756969..16757760 | 274..1055 | 97 | <- | Plus |
