FMO02644.5prime Sequence
1178 bp (1017 high quality bases) assembled on 2008-05-23
> FMO02644.5prime
CAGTCGACATGCCTCGCCTTGTCAATGGCCGCGAAGCCGCGCCCACGTAC
TCGAATCTGGTTGGCTTCATATTCATTTTCAATCTAATCGTTGGAACCGG
AGCGCTGACGCTACCCGGAGTCTTTGCCAGGGCAGGATGGATGCTTTCCC
TGATCGTCATTGTTCTGCTGGCCATCATCAGTTACATGACGGTCACTTTT
ATCATAGAAGCAATGGCTTGTGCGAATGCAATCAGGAATTGGCAGACTCT
GCAGGCCCTGCGCCAAAGTCGCAGTTCCGCCGAAAACAGTGAAAACGATG
ATAATGCTGATGATGTTTCGCTGGCATCGGGAGCCGAGCAAGTTGGCGAT
TTCGAGCGGGTTCCGCTGACCATCCAAAACCGGGAGTTCCACTACTATCA
GCTGTCCCACAAATTCGAACTTGGCGAAATGGCGACACTATTCTTTAATG
AGTTTGGCCGCGTAATGTTCTATCTCTGCCTGATTGTTTATCTTTACGGG
GATCTGAGCATATATTCCGCCGCCGTGGCAAGAAGTCTGCGTGACGTCGT
ATGTGACCAAACAAATGGAACGGATACTAATAACTTGATGTATTGGCCCG
GAGACTTTGAGAACAATACATCTCTGGCCTGCTGGAAGGAACACACGATA
TCTCGCTTGAACATGTACAGGGTGTTGCTCATAGGATTCACATTGATCTT
TGGTCCATTTGTGTACTTTAATGTGCAGAAAACGAAGTACCTGCAGATGC
TGACCGCTGCTTTTCGGTGGATGGCTTTTACCCTGATGATCTGCATATCG
CTAAAACTTTTGATTTCCAGAGGTGCCAAAGGTCATCCAGCGACCTTTAA
TGTATATGGAATTCCCTCTCTTTTCGGCGCCTGTGTTTACTCCTTCATGT
GCCACCACTCACTGCCCAGTTTGCTGGCGCCATCAGACACAGTCATGGTT
TCCAATTCTATCCATGACTACTATCATTTGTGCAATTTTACATTCTACTG
GCATGAACAGCATTTTGCTTCGACGATCGAGACTTACACAATAAGATTTT
GCCTACGATGTACTACGTAGCCTTTGTCAGCAATGAATGCATGATACTCT
TGCACTTTTTCAATTAACGTCAACAGTGCCTATGGTGCCTACGCCGTGAG
AAACACTCAAATCCTATATTCTCAGAAC
FMO02644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5262-RB | 2033 | CG5262-RB | 113..1198 | 9..1075 | 4820 | 97.4 | Plus |
| CG5262-RA | 1895 | CG5262-RA | 113..1198 | 9..1075 | 4820 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20429516..20430010 | 553..59 | 2475 | 100 | Minus |
| 3L | 28110227 | 3L | 20429169..20429390 | 774..553 | 1110 | 100 | Minus |
| 3L | 28110227 | 3L | 20428949..20429117 | 941..774 | 795 | 99.4 | Minus |
| 3L | 28110227 | 3L | 20430311..20430363 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:29 has no hits.
FMO02644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:07 Download gff for
FMO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 115..1122 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:16 Download gff for
FMO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 106..1113 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:59 Download gff for
FMO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5262-RA | 106..1113 | 1..1002 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:59 Download gff for
FMO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20428882..20429116 | 775..1002 | 96 | <- | Minus |
| 3L | 20429169..20429389 | 554..774 | 100 | <- | Minus |
| 3L | 20429516..20430009 | 60..553 | 100 | <- | Minus |
| 3L | 20430313..20430370 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:16 Download gff for
FMO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20421982..20422216 | 775..1002 | 96 | <- | Minus |
| arm_3L | 20422269..20422489 | 554..774 | 100 | <- | Minus |
| arm_3L | 20422616..20423109 | 60..553 | 100 | <- | Minus |
| arm_3L | 20423413..20423470 | 1..59 | 93 | | Minus |
