FMO02648.5prime Sequence
1201 bp (1012 high quality bases) assembled on 2008-05-23
> FMO02648.5prime
CAGTCGACATGGTGCAGATCTGCGTGCTGTGCCTCAGCGGCGAGCGGGAC
GAGCTGATCTTCGGCACTGTGCACGTGGAGGGCAACATGATGGTGCACCG
CAACTGCTTGTACCTCAGCTCGAATCTCATCCAGCGTGGCGAAAAGAAAT
TGAGCATCATGAACTTCCTCAAGGAGGACATCGAAGCGGAGGTCAACCGC
TGCCGTTTGCTTAAGTGTTGCTATTGCCGCCGCTTGGGCGCCAATATTTG
GTGCTGCAAGTCGGGGTGCCGTCGCACCTTCCATACCAAGTGCGGCGTCG
ATAATCTGGCCCAGAACCAGTTCTGCGACACGTACAACTCGTTCTGCCAT
CAGCATGTGCTGGTGCCTCGAAACCGTCCGGTGTTCAAGAATGACGAGGA
ATGTCTCCTATGCGCGGAGGACGTGGTTGCCAAGGGCGAGCGCTTCAGCG
TGGTGACCTGCCTATACGCGCCGTGCTGCCGCAATGGATGGTTCCACCGC
AGGTGCCTGCAGCGCTACGCCAACTCGTCCGGCTACTTCTTCAAGTGCCC
GCTGTGCAACAACACAGATGTGTTCCGCAGGGTGGCTTATATGGGCATCG
CGGTGCTGGACCAAGACGCTTCCTGGGAGACCGAGCCGGACGCCTTTGCT
GGGCAGTACCGCCGCGATGTCAATTGTACGGCCGCGTTGTGCGTTGCGGT
CTCTGGTCGCGCCGACACTTCCGCCATGCTGCTGTACTGCACCTCATGTG
GCGCCAATCCGTCACATTACCTTTGCACGTTGAAGACTCTCCAAAACTAC
GTCTGCAAGGTTTGCTCAGCCGTCAGCCCGGAGCCAGTGCCCGTTGCCGA
ATCGGACTCGGATGACGCCGGCTCAATGGACGACTCGGCCGAGCCCCACG
TCCAGGTCACCTAATGGTGATCAGATTCAAGAGAGCTATCACCCTCCAAT
GGGATGATTTCGGCTCCTCCGACGATGATGCCGTCTTTCAGCGTGCGTCG
AAACCAAAGTGCAGAGTCCCGTGTGACCCTCCCCGATGATCAACATCTAC
TCTGCGGGGCACCGCCTTAGCGATCTGACTCGCAATTGAATCCAAGGACG
CAACACTTTCCTCAAGTGAGTACTCCGTTCCCTGCCTCGGCATGGAAATC
TTCCATCCAAGTCCCATTCCAATCGCGCATCGACACCTGATATACAACGG
A
FMO02648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 379..1452 | 8..1071 | 5030 | 98.5 | Plus |
| Phf7-RB | 2211 | CG9576-RB | 374..1447 | 8..1071 | 5030 | 98.5 | Plus |
| Phf7-RA | 2221 | CG9576-RA | 95..1168 | 8..1071 | 5030 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20161940..20162443 | 613..110 | 2520 | 100 | Minus |
| X | 23542271 | X | 20161439..20161875 | 1044..614 | 1810 | 97.5 | Minus |
| X | 23542271 | X | 20162535..20162637 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:55 has no hits.
FMO02648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:46:55 Download gff for
FMO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 90..1172 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:26 Download gff for
FMO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..1173 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:00 Download gff for
FMO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..1173 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:00 Download gff for
FMO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20161439..20161875 | 614..1044 | 97 | <- | Minus |
| X | 20161940..20162442 | 111..613 | 100 | <- | Minus |
| X | 20162535..20162641 | 1..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:26 Download gff for
FMO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20055472..20055908 | 614..1044 | 97 | <- | Minus |
| arm_X | 20055973..20056475 | 111..613 | 100 | <- | Minus |
| arm_X | 20056568..20056674 | 1..110 | 97 | | Minus |
