FMO02650.5prime Sequence
972 bp (972 high quality bases) assembled on 2008-05-23
> FMO02650.5prime
CAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGGATACGGAG
GTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGCGCCGCCCT
TCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTACGAACCAA
TCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCATGAAGTTG
CCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGACGGCTTCTA
CGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCTGGTGGCCA
TGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGCAGCCAGAG
GAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTACGTCCAGTT
CAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGGAGTCGTGG
CCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGCAGTTTGTC
GGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCCGAGATTTG
GAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCCAAAGCTGC
TGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCTACATCCTT
AACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAATTCCGGATT
CACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGTGGTGTCCA
CCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAACCGCCAATT
ATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTGCAGGTTCG
CGGGGAGCTTAAGCGCGGCAGCTCCCTTTTCTGGCGGTCACAATCCATCA
GTTCTCCAGTAATAGCCACCTCATTCGCGCCTTGCCTAAGCTGGCGCGTA
CCAGGCAAGCTTTCTAGACCAT
FMO02650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtch-RG | 1396 | CG6851-RG | 134..1081 | 9..954 | 4690 | 99.8 | Plus |
| Mtch-RF | 1408 | CG6851-RF | 146..1093 | 9..954 | 4690 | 99.8 | Plus |
| Mtch-RE | 1386 | CG6851-RE | 124..1071 | 9..954 | 4690 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 185367..185866 | 389..888 | 2500 | 100 | Plus |
| 3L | 28110227 | 3L | 184864..185074 | 9..219 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 185134..185304 | 219..389 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 185925..185989 | 886..949 | 275 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:51 has no hits.
FMO02650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:15 Download gff for
FMO02650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6851-RC | 115..1073 | 1..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:19 Download gff for
FMO02650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtch-RE | 117..1075 | 1..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:54 Download gff for
FMO02650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtch-RE | 117..1075 | 1..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:54 Download gff for
FMO02650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 184857..185074 | 1..219 | 98 | -> | Plus |
| 3L | 185135..185303 | 220..388 | 100 | -> | Plus |
| 3L | 185367..185864 | 389..886 | 100 | -> | Plus |
| 3L | 185926..185999 | 887..960 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:19 Download gff for
FMO02650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 184857..185074 | 1..219 | 98 | -> | Plus |
| arm_3L | 185135..185303 | 220..388 | 100 | -> | Plus |
| arm_3L | 185367..185864 | 389..886 | 100 | -> | Plus |
| arm_3L | 185926..185999 | 887..960 | 93 | | Plus |
