FMO02652.5prime Sequence
1216 bp (1047 high quality bases) assembled on 2008-05-23
> FMO02652.5prime
CAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGATTGTGGAG
GAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACGGAAAAGAA
CGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCAGGATTTCA
AAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGGACAAATGC
TCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATATTTTTCTA
CGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAAGAACAGCA
AGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCGAGGAGAAC
GAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCCAACGACGA
GTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGACCGCGTGC
GGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGTACTCCAAG
AACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGAAATACTGT
GGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCAAAATATCG
CTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTGGCATCGGC
TGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTTCACTGCAG
CGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGTCACTGCCT
TTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAGAATTTATT
CTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTCCCTGAAAA
AAAAATACAGCAGAGCTGGCGTCTGAAAAACTGGACATCTGGTCACTACT
CAAACGTTGTCATAGAGCTGGAAGAAACTTCATCCAGCACAATGATGTCG
CTCAAGCAGACCGGGATACCCGCGTCCGATTTGATGCGATGAAGACAACT
GGTACGATATACTGGCATAGCATCAACAGACTTTGGGATCGGTACTTCAA
TATCTGATGCCTTAGCAGCTTTCTAGAACATTCGTGGCCGCGCGGGCCAG
GTAGTGGAATTATCTATCTAATCTAATCTAAATTCCACTAGCTAGAGATC
CTGGCTTGACATGTGCCTGAATTCCCCACTAATAAAAGAGCCGGCAGCAT
ACGCAAGCGAAGTCAG
FMO02652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1416-RC | 1457 | CG1416-RC | 101..1162 | 9..1064 | 5115 | 99.2 | Plus |
| CG1416-RB | 1500 | CG1416-RB | 144..1205 | 9..1064 | 5115 | 99.2 | Plus |
| CG1416-RA | 1644 | CG1416-RA | 203..1264 | 9..1064 | 5115 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21758440..21759078 | 155..793 | 3195 | 100 | Plus |
| 2L | 23513712 | 2L | 21758212..21758360 | 9..157 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 21759231..21759366 | 794..929 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 21760480..21760620 | 930..1064 | 360 | 93.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:07 has no hits.
FMO02652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:18 Download gff for
FMO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1416-RC | 104..1174 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:36 Download gff for
FMO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1416-RA | 198..1268 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:21 Download gff for
FMO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1416-RA | 198..1268 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:21 Download gff for
FMO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21759231..21759366 | 794..929 | 100 | -> | Plus |
| 2L | 21760480..21760624 | 930..1068 | 92 | == | Plus |
| 2L | 21758207..21758359 | 1..156 | 97 | -> | Plus |
| 2L | 21758442..21759078 | 157..793 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:36 Download gff for
FMO02652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21760480..21760624 | 930..1068 | 92 | == | Plus |
| arm_2L | 21759231..21759366 | 794..929 | 100 | -> | Plus |
| arm_2L | 21758207..21758359 | 1..156 | 97 | -> | Plus |
| arm_2L | 21758442..21759078 | 157..793 | 100 | -> | Plus |
