FMO02654.5prime Sequence
1219 bp (963 high quality bases) assembled on 2008-05-23
> FMO02654.5prime
CAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGCAGAGCCTG
CGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGAGTCCTCAA
GGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCCCGTGCAGT
TCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCAAACTGGAT
GCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTCAGCCCGAT
GCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAATCTCCGCCG
AACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGGTGGTGCCC
AAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCCAAGAACGT
CCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATTTGATGCCA
TGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGCAGGGCGAT
GAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGATGTTTTCGT
CAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTTTGGTGAAC
TGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCGCCAAAACC
GATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGCATTCTGAT
GGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTTATCGCGCG
TGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAGTGGCCGAT
TCCCTGGAGACGTGCTCCTTTCGATGACGGTGAGACGATTGTCAAGCAGG
AGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGCGGTGTGCT
GCAGCAGCGTTCTGAGGGCGAGGATCACGCCGAGGTAGGACGTCTGGGTA
GCACGATTACTTTGGCGAGATTGCTCTGCTTTGGACCGACCACGTGCATC
GACTGTGTAGCTCGTGGTCGCTCAAATGCGTCAACTGGACCGGGCGAGAT
TGGACGCCTGATGGACCTGAGCGACGACTACTCAAGGCAACTTCACGGCT
ATACCACAGTTTCGGTATCGGTGGTGCGGTAACAAGGCTTTCTGAGACAT
TGGTGGGGCGGGCTAGGTAAGTGTCGTAGTCTGAACTTATGCAGTAAATG
TCCCATGAGTTACCACACT
FMO02654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R1-RU | 3570 | CG42341-RU | 476..1596 | 7..1120 | 5025 | 97.3 | Plus |
| Pka-R1-RT | 3240 | CG42341-RT | 146..1266 | 7..1120 | 5025 | 97.3 | Plus |
| Pka-R1-RP | 3577 | CG42341-RP | 483..1603 | 7..1120 | 5025 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20832845..20833207 | 182..544 | 1815 | 100 | Plus |
| 3L | 28110227 | 3L | 20833283..20833658 | 543..917 | 1735 | 99.2 | Plus |
| 3L | 28110227 | 3L | 20816658..20816834 | 7..183 | 885 | 100 | Plus |
| U | 3151297 | U | 973046..973165 | 58..183 | 415 | 90.5 | Plus |
| Y | 3667352 | Y | 3286046..3286204 | 183..7 | 395 | 84.2 | Minus |
| 3L | 28110227 | 3L | 20833731..20833869 | 915..1048 | 370 | 92.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:45:57 has no hits.
FMO02654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:30 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:27 Download gff for
FMO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 476..1551 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:18 Download gff for
FMO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R1-RP | 476..1551 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:18 Download gff for
FMO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20816651..20816833 | 1..182 | 98 | -> | Plus |
| 3L | 20832846..20833205 | 183..542 | 100 | -> | Plus |
| 3L | 20833283..20833657 | 543..916 | 99 | -> | Plus |
| 3L | 20833733..20833869 | 917..1048 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:27 Download gff for
FMO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20809751..20809933 | 1..182 | 98 | -> | Plus |
| arm_3L | 20825946..20826305 | 183..542 | 100 | -> | Plus |
| arm_3L | 20826383..20826757 | 543..916 | 99 | -> | Plus |
| arm_3L | 20826833..20826969 | 917..1048 | 92 | == | Plus |
