FMO02655.5prime Sequence
1198 bp (994 high quality bases) assembled on 2008-05-23
> FMO02655.5prime
CAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGCTGAAGGAT
GCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGCACCGAAGG
CGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGCCGGCGGAG
GAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCTTTGGCGCC
CCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACACCCATGTC
GCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCACGGACAGCG
GGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACAGTCTCAAG
AACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATGCTGGAGAA
GTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGCCCAGATAG
AGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGAGGCTAACG
CGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAGCACGCCCT
GGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCTGCAGAAAG
AGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGAACGGCGAG
CTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAACACACTGTG
CAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTACGAAACGG
CCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACACCAAGCCG
GAGCTGACGCCCTCGGGCCGTCGCTCTTGAGGAGACCCAGCGCAGCTATG
CGCAGCACAAGGGAGCAATATGAGAAGCTGCGCTCGGACGTGGCCGTCAA
ATGCAATTTCTCGAGGGAATCGCATTAAAGTGATGACAGCAATTGATCCT
GCTGCACATGCCATCGCTGCCTACTTCTCGGCATGCCATGCACTGGAGAG
CACTCTGAGCAGTCAACATAAAGCTTAAGTTCACCTATGCGTCCTTGGAA
TCTGGCTGGGAGCAGGCAAGCTTTCTAGACGTTCGTTGGGCGCGCGGGCC
AGGTACTGGCATATCTAATCATAACTAATCTAATCACTAGCCTAGAGATC
CTGGTCCATGACTAGGTCTTGCAACTCCACAAAAAAAAGCCCCGGGGG
FMO02655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arfip-RA | 2004 | CG17184-RA | 284..1348 | 9..1065 | 4840 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11233922..11234447 | 754..229 | 2630 | 100 | Minus |
| 3R | 32079331 | 3R | 11234508..11234730 | 231..9 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 11233412..11233572 | 914..753 | 665 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:42:23 has no hits.
FMO02655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:24 Download gff for
FMO02655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17184-RA | 292..1342 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:23 Download gff for
FMO02655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arfip-RA | 277..1327 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:34 Download gff for
FMO02655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arfip-RA | 277..1327 | 1..1043 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:34 Download gff for
FMO02655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11233402..11233570 | 755..923 | 97 | <- | Minus |
| 3R | 11233922..11234444 | 232..754 | 100 | <- | Minus |
| 3R | 11234508..11234737 | 1..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:23 Download gff for
FMO02655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7059124..7059292 | 755..923 | 97 | <- | Minus |
| arm_3R | 7059644..7060166 | 232..754 | 100 | <- | Minus |
| arm_3R | 7060230..7060459 | 1..231 | 98 | | Minus |
