FMO02656.5prime Sequence
1209 bp (983 high quality bases) assembled on 2008-05-23
> FMO02656.5prime
CAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATCCGAGCATC
GGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTGCTCAGCTT
GGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTGCAGTGGCA
TTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCATTAAGGTG
TGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTGCCGATGTT
GCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGGCCACTCTG
CCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCCTCCTGGGG
CTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCGGACTTGTC
AGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCATGGTCAATC
ACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTCTACGCGCT
CGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTCGACACTGC
CCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATATAATCAACA
TTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATTTGCTAGCT
GGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTTATCATTGT
GGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGAAAAGACCA
ATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATAACAGGGTT
CGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCACTGACTGA
GGCCTACTGCATGGCCATCGTTGAGGCGGCTTCTGTGGACTGCAGGTGGG
TGTCAACAGTGTGGGGCGGAATTCCCGAAGTGCTACCAAGAGTCTTATTA
CTGCTGGCAGAGCCCGAATTGATGCCATTTACGCAGCGAATTCTAATTGC
CATCGACGTCATCGAAGAGTCCTTTAAGTAAGTCCATCGATTGGCAATGG
CATTTGCCTCGGACGCTATGGAAAGGTAAACCGGCACGTCCAGAAGTCGA
TACTCTATCTCTCTTACCACTGCACAGTCTTGTCTCTCTGCGACGACGCT
TTACGACGATAAGGTCTAATAAAGATAATGAGTGGTGGAAAGCCTCATTA
CATTGGTAG
FMO02656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6401-RB | 1872 | CG6401-RB | 137..1257 | 9..1117 | 5030 | 97.6 | Plus |
| CG6401-RA | 1642 | CG6401-RA | 137..1257 | 9..1117 | 5030 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17738359..17738771 | 1007..595 | 1705 | 97.4 | Minus |
| 2R | 25286936 | 2R | 17739133..17739380 | 356..109 | 1240 | 100 | Minus |
| 2R | 25286936 | 2R | 17738828..17739067 | 594..355 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 3384077..3384249 | 98..270 | 610 | 90.2 | Plus |
| 2R | 25286936 | 2R | 17739448..17739549 | 110..9 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 3384246..3384349 | 306..409 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:22:27 has no hits.
FMO02656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:25 Download gff for
FMO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6401-RA | 101..1240 | 2..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:40 Download gff for
FMO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6401-RA | 129..1268 | 2..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:44 Download gff for
FMO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6401-RA | 129..1268 | 2..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:44 Download gff for
FMO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17739133..17739378 | 111..356 | 100 | <- | Minus |
| 2R | 17739448..17739557 | 2..110 | 96 | | Minus |
| 2R | 17738226..17738771 | 595..1127 | 94 | <- | Minus |
| 2R | 17738828..17739065 | 357..594 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:40 Download gff for
FMO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13625731..13626276 | 595..1127 | 94 | <- | Minus |
| arm_2R | 13626333..13626570 | 357..594 | 100 | <- | Minus |
| arm_2R | 13626638..13626883 | 111..356 | 100 | <- | Minus |
| arm_2R | 13626953..13627062 | 2..110 | 96 | | Minus |
