FMO02659.5prime Sequence
1204 bp (1021 high quality bases) assembled on 2008-05-23
> FMO02659.5prime
CAGTCGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCGAGGGCAAC
AAACAGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGCAGTCGCGA
TGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGGCACCGATC
GCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCAATGGCAGC
TTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAACTGGTGGC
AATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGAATTGCAAA
TAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTACTTTTTC
TATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTAGTCCTCGA
ATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCAAAACCA
AGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATCAACTGTTC
AGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGATATCAA
GCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGCTCTGTG
ACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTATCGTAT
ATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGCCATCAA
TTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTTGGCCGAAC
TGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGGATCAGCTC
GTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAGATACGCGA
AATGAATCAAACTACACGGAATTCAAGTTCCCTCAGATTAAGAGTCATCC
ATGGCAGAAAGTTTTCCGTATACGCACTCCTACAGAGCTATCAACTTGGT
GTCCCTGCTGCTCGAGTATACGCCCAGTGCCAGGATCACACGCTCAAGCC
TGCGCACATCGTTCTTCGATGAGCTACGCATGAAGGTATCACACTTGCCA
CGTCGCGAATTGCCGCCGCTGTTCAACTCACAAGCATGACTCTCAATACA
GCCCAGCTATGCGCAATGTTGCCCAAGAATCTGCCAGCATCCGGACCTGC
GCATCGAACCCTGCCGGGGAACACCTCTCTATTGGGGCGCAACGTTCTCT
CCAC
FMO02659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RC | 3110 | CG2621-RC | 549..1710 | 9..1149 | 5215 | 97.7 | Plus |
| sgg-RF | 4244 | CG2621-RF | 647..1808 | 9..1149 | 5215 | 97.7 | Plus |
| sgg-RE | 3055 | CG2621-RE | 494..1655 | 9..1149 | 5215 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2671307..2671545 | 479..717 | 1195 | 100 | Plus |
| X | 23542271 | X | 2669913..2670103 | 94..284 | 955 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 717..912 | 935 | 99.5 | Plus |
| X | 23542271 | X | 2671119..2671231 | 367..479 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 546..826 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2642009..2642095 | 9..95 | 435 | 100 | Plus |
| X | 23542271 | X | 2672914..2673043 | 911..1036 | 435 | 96.2 | Plus |
| X | 23542271 | X | 2670172..2670257 | 283..368 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:18 has no hits.
FMO02659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:29 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:21 Download gff for
FMO02659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 483..1670 | 1..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:30 Download gff for
FMO02659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RE | 483..1670 | 1..1162 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:30 Download gff for
FMO02659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2671629..2671822 | 718..910 | 99 | -> | Plus |
| X | 2672914..2673103 | 911..1088 | 92 | -> | Plus |
| X | 2671308..2671545 | 480..717 | 100 | -> | Plus |
| X | 2669913..2670103 | 91..284 | 98 | -> | Plus |
| X | 2670174..2670257 | 285..368 | 100 | -> | Plus |
| X | 2641998..2642090 | 1..90 | 95 | -> | Plus |
| X | 2671121..2671231 | 369..479 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:21 Download gff for
FMO02659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2536031..2536123 | 1..90 | 95 | -> | Plus |
| arm_X | 2563946..2564136 | 91..284 | 98 | -> | Plus |
| arm_X | 2564207..2564290 | 285..368 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 369..479 | 100 | -> | Plus |
| arm_X | 2565341..2565578 | 480..717 | 100 | -> | Plus |
| arm_X | 2565662..2565855 | 718..910 | 99 | -> | Plus |
| arm_X | 2566947..2567136 | 911..1088 | 92 | -> | Plus |
