FMO02660.5prime Sequence
1184 bp (1006 high quality bases) assembled on 2008-05-23
> FMO02660.5prime
CAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAACCAGAACTG
TCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAGGATTGTGA
CGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGTGGACGCAG
CGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGCATGGACCC
AACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAATTTCGATGA
TGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGGATACCGCA
CCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCTGGTGGACC
AATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATCCTGTTCAT
TGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGCCTCCCTGA
GCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTCTGTGCATG
CTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAGGAGCACTA
CGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTCGCTGGTGG
CCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACACCTTCCTG
CGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTGGCCATTGC
CGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGTGGCGGTGC
TGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACTGGGCGGTG
GCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTGCCCCGCAT
CGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTTCTATGCGGCC
AAGATTCCGGAGCGCTGGTTCACCGGCAAGTGGACTTCGTTGGGCATTCG
CACACTGGTGCACTGATCATCGTGCCGCCTTCTATCACTGCACACACCGG
ACTGTCTATGCCGAGTATCGCCTGAATACGATGCATGCACAGTCTCTCCG
CAGCTTTCTAGACATTCGTTTGCCCGCGGCCAGTAGTGCTATCATATCTA
TATCTATATCTATCCACTAGCTTAGGGAATTCTTGCTATTGACATATGGC
TTGTGAATCTCATCACATAAGAAGGCCCTGGCGC
FMO02660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7530-RC | 1704 | CG7530-RC | 249..1302 | 8..1049 | 4925 | 98.7 | Plus |
| CG7530-RB | 1574 | CG7530-RB | 119..1172 | 8..1049 | 4925 | 98.7 | Plus |
| CG7530-RA | 2349 | CG7530-RA | 894..1947 | 8..1049 | 4925 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14725457..14725931 | 833..359 | 2375 | 100 | Minus |
| 3R | 32079331 | 3R | 14727189..14727328 | 252..113 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 14725188..14725390 | 1028..833 | 575 | 94.6 | Minus |
| 3R | 32079331 | 3R | 14726040..14726147 | 359..252 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 14730511..14730616 | 113..8 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:54 has no hits.
FMO02660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:12 Download gff for
FMO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RC | 241..1302 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:32 Download gff for
FMO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RA | 886..1947 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:16 Download gff for
FMO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7530-RA | 886..1947 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:16 Download gff for
FMO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14725162..14725389 | 834..1049 | 93 | <- | Minus |
| 3R | 14725457..14725930 | 360..833 | 100 | <- | Minus |
| 3R | 14726040..14726147 | 252..359 | 100 | <- | Minus |
| 3R | 14727190..14727327 | 114..251 | 100 | <- | Minus |
| 3R | 14730511..14730622 | 1..113 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:32 Download gff for
FMO02660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10552912..10553049 | 114..251 | 100 | <- | Minus |
| arm_3R | 10556233..10556344 | 1..113 | 97 | | Minus |
| arm_3R | 10550884..10551111 | 834..1049 | 93 | <- | Minus |
| arm_3R | 10551179..10551652 | 360..833 | 100 | <- | Minus |
| arm_3R | 10551762..10551869 | 252..359 | 100 | <- | Minus |
