FMO02662.5prime Sequence
1257 bp (1059 high quality bases) assembled on 2008-05-23
> FMO02662.5prime
AATATACGAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAA
TGGCTGAGATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGT
GGACAACTACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCG
ACATTGATGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTAC
CGGACAACCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAAT
GGTGGTTAAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATAC
AGTTTGGGCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTG
CCAGAGTTTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTA
TTACGGCGAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCG
CGGAGCAGGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAG
CACGCCATGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTA
CGCCATGAAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATC
TGAAGGAATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTC
ACCATGAAAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCA
GCCACAGATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGG
ACTATTCGCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCC
ACCCTGTGCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGA
TGACAAGGAGGAGCCGCAGGAAATCATGATGTTCGACTACCAAGACATTG
CGAGTCTCCTCTCCCATGGTCGATCTCAACGTCTTTCTAGCCGTGTCCAT
TTTTGCCGAGGTACGCGATCCAACTTCGAGGCCATCTTCTGTGATACACC
TTTGCGCTTCATAATAGCTATAGGGAGCACGCCAGGAGGAGGTTCCGGAT
TTCCTAAGTCGCGGTTGAGCTTCTGAAGAGTACGTGGCGTTTCCTGCCGT
ACAGCTTATCAATCGGCCAGTTTCTCAATGGTTGGTGATCCTGACTTCGC
CGAGAGGATGTTGCCTTGCACTTCTTGACAGAAACTTCCAACGGACATTG
AATTCAGAGGTGGAAAAGTAGTGTGGTAACGGGGAAGTATGTCTCTCTCA
TCAGCGA
FMO02662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JhI-26-RA | 1495 | CG3767-RA | 49..1156 | 20..1124 | 5285 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16289950..16290751 | 259..1058 | 3785 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16289368..16289608 | 20..260 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:58 has no hits.
FMO02662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:31 Download gff for
FMO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3767-RA | 36..1171 | 10..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:15 Download gff for
FMO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-26-RA | 41..1176 | 10..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:08 Download gff for
FMO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JhI-26-RA | 41..1176 | 10..1141 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:08 Download gff for
FMO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16289360..16289608 | 10..260 | 98 | -> | Plus |
| 2R | 16289952..16290751 | 261..1058 | 99 | -> | Plus |
| 2R | 16290928..16290978 | 1059..1110 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:15 Download gff for
FMO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12176865..12177113 | 10..260 | 98 | -> | Plus |
| arm_2R | 12177457..12178256 | 261..1058 | 99 | -> | Plus |
| arm_2R | 12178433..12178483 | 1059..1110 | 94 | == | Plus |
