FMO02664.5prime Sequence
1183 bp (1025 high quality bases) assembled on 2008-05-23
> FMO02664.5prime
CAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTATCTATAATG
ACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGCACACACAG
CGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCTCAAGCAAT
TGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACAACAAGGCT
TTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTTTATGATCA
TGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGAGACTTTTA
GTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCAGGCTAAGC
AGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATACAGAGCAT
CCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCTGCAAACGG
CCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACGCAATTGAT
AATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAAATCTCCAC
TCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCAGGAAACTG
GCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTGCAGGTCGT
GAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATTCCAGCCCG
GGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAAACGTCCATCCCACC
GGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTCATCTGTT
CGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTGGTCGTCT
TCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGTGACGCCTGGC
AGCTATCTGGGCCGCAATTTCTGCCCACTCCTTGGCGCGGACTGATGGAC
GATGAACTATGCGATAAGCGAGCATCAAAGATCTCGAATTCATCCATCAC
AATGATTTATTGCGGGCCAAAAACGAGAGCTGCATGTGTGCAAGAATCCA
CCGAGTGACGAAGACAGCAAGCTTTCTGAACATTCGTTTGCCGCCGGTCC
CAGGTAGTGTCAAATCATAGCTTCTAAGCGAATCCACAGCCTAGGAATCC
AGCTATGAGACATAGGGCTTGATTCTCACCACT
FMO02664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11980-RB | 1192 | CG11980-RB | 35..1053 | 9..1024 | 4945 | 99.3 | Plus |
| CG11980-RC | 1195 | CG11980-RC | 35..1056 | 9..1024 | 4905 | 99 | Plus |
| CG11980-RA | 1179 | CG11980-RA | 47..1040 | 34..1024 | 4820 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9004506..9005167 | 341..1001 | 3165 | 99.5 | Plus |
| 3R | 32079331 | 3R | 9004142..9004452 | 34..344 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:11 has no hits.
FMO02664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:34 Download gff for
FMO02664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11980-RB | 25..1107 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:16 Download gff for
FMO02664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11980-RB | 26..1108 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:54 Download gff for
FMO02664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11980-RB | 26..1108 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:54 Download gff for
FMO02664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9004142..9004451 | 34..343 | 100 | -> | Plus |
| 3R | 9004509..9005247 | 344..1070 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:16 Download gff for
FMO02664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4829864..4830173 | 34..343 | 100 | -> | Plus |
| arm_3R | 4830231..4830969 | 344..1070 | 97 | | Plus |
