FMO02665.5prime Sequence
1197 bp (1008 high quality bases) assembled on 2008-05-23
> FMO02665.5prime
CAGTCGACATGATGCGTTCTTTGATAGGAGCACAAAAGTGCTGGGGCCTG
ATCCGCACCAGGAACTTTATGGAATTACCCACCAAACAGGTGCCAGCATC
CTTCGCATTGTTCAAGCGTCACTACTCACCGCCCACGCATATCAAGCAAT
CAGCGGTCGCCAATGAATCCGGAACCATGGCGGAGGTCAAGCAGGGGATG
ATGAAGCGATTGGGGCTGGAGCCCGGTTACAACCCGCTGCCCAAATCCAG
GGAGCAGCTGCTCAAGTACCAGCCGAAGCTGGAGGATCTGCCTCCAAGAG
CTATGCAGGATTCCTTCACCTCGGCCATCATTCCTCTGAGCACGGACCGC
AGTTTGCAGGACAAATATGTGACCTATCTGGGCAATGTGCGATTCGGGCG
ACTTCTGGAGGACATGGACTTGTTTGCTGCTTGGTGCTGTCATAAACACC
TGGTTCTGCCCAATCTGCCGGAGGGAGTTCATCTGCCGTACACCTTTGTG
ACCATTCTGGTGGACCGCATCGATTTCACCAATGTCTTGGCTTCAGGCAC
CCAAGATATCCGTTTGTCTGGGCACGTTTCCTGGGTGGGAACCAGTTCAA
TTGAGGTGGTAGTGTGGCTGGAACAGATGGTTGGCGGGAGGTACCAAAAG
TTAACCCGTGCCTTGTTCCTGATGGCAGCAAGAAACGCTAACAATACCGG
AGCGGCTCCTGTGAACCCCTTACAGCCGGCCAACGAGGAAGAGAAAGTGA
TTCTGGCTGGCGGCGCAGATAGAAAGAAGAAACGTCAGATTCTCTGTGCT
CAGTCCATCTTTAACGTGGAACCCAATGACCCGGAGCAGACAATTATGTA
CGAGCTGTACAAAAGGACAACTCCCACCAACACTTTGGAACTCAACAAGC
GCATCCTGCCACCAAACTGTCGCTGGATGGAGGACTCTTTCCAGATGAGC
ACTATTCCCTCATTTCCGGAGCACAGACCACCACAACGGTCTTCGGAGCT
CTCATGCGATGGCCTGAGATAGCTGGCAGCAGCTACTCTACTGCAACGCG
ACAGCTGGACACATATCCGAACTCAGCTCGAGAGCCGTCAGCGTGAACGC
CTCACTCAGAGAACCGCCTATGGGGGTACCCAGGAAATACGGCAATCAGT
ACGTTGCAAGTAGTGACTCAACGGGACCAGGTTACACACACCCAGCG
FMO02665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1635-RA | 1548 | CG1635-RA | 77..1218 | 5..1122 | 5015 | 97 | Plus |
| CG1638-RB | 1567 | CG1638-RB | 200..996 | 177..976 | 990 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31589345..31589892 | 429..976 | 2725 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31589043..31589286 | 186..429 | 1220 | 100 | Plus |
| 3R | 32079331 | 3R | 31591201..31591745 | 429..976 | 680 | 75.8 | Plus |
| 3R | 32079331 | 3R | 31588749..31588860 | 5..116 | 545 | 99.1 | Plus |
| 3R | 32079331 | 3R | 31588920..31588990 | 116..186 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 31590898..31591056 | 186..344 | 225 | 76.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2707..2754 | 244..291 | 132 | 75 | Plus |
FMO02665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:36 Download gff for
FMO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 78..1053 | 1..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:08 Download gff for
FMO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 78..1053 | 1..976 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:26 Download gff for
FMO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1635-RA | 73..1048 | 1..976 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:26 Download gff for
FMO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31588920..31588990 | 116..186 | 100 | -> | Plus |
| 3R | 31589044..31589286 | 187..429 | 100 | -> | Plus |
| 3R | 31588745..31588859 | 1..115 | 96 | -> | Plus |
| 3R | 31589346..31589892 | 430..976 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:08 Download gff for
FMO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27414467..27414581 | 1..115 | 96 | -> | Plus |
| arm_3R | 27414642..27414712 | 116..186 | 100 | -> | Plus |
| arm_3R | 27414766..27415008 | 187..429 | 100 | -> | Plus |
| arm_3R | 27415068..27415614 | 430..976 | 99 | == | Plus |
