FMO02666.5prime Sequence
1205 bp (1023 high quality bases) assembled on 2008-05-23
> FMO02666.5prime
CAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCCGTCACATC
GTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTCCAGAGCAA
GGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAAGGTCTTGA
ATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGTGCCCGGAA
TACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAGGGAACTTT
CGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAAGAGCGAGG
TGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAACGAAACAA
ACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCACGCAGTAT
CAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCGCGAGCACA
ATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATATCGAGGCG
GTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTAGACATTGG
CAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTTCTTGGAGT
TCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAAAACTCTAT
ACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAACCCGCTGGC
GGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCTCAACTTTG
ACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGGACGTCACC
GAGGAGGAATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTACAATCTGAA
CTACGTCGCCATGGATGGCAACATTGGCTGCTTGGTTAATGGTGCCGGCC
TGGGCATGGCCACCATGGACATCATCAGCTGAATGAAGCGAGTCCGCCAC
TTTTGGACGTCGCGGTGCGTCAGGAGGATCAGTGCCAAGTCTTCGAGATC
CTCACTGCTGACTCGAAGTCAAGGAATCTGTCATTGTCTTGCAGCATGTC
AATGTGCACCATTGCCAATGCATTGTGCTGCATCCAAAGCTGCACTGAAT
GTTCCACTGGTTGGCAACTGGAGCACCATGTATCAGCTCGCGATCTGAAT
TCCGGCTGTCACATATCGACGCCCAGGACTTGGATAGTAGTCCGCCCCAC
AAGAG
FMO02666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sucb-RC | 1518 | CG10622-RC | 149..1288 | 9..1123 | 4975 | 97.1 | Plus |
| Sucb-RA | 1600 | CG10622-RA | 149..1288 | 9..1123 | 4975 | 97.1 | Plus |
| skap-RH | 1914 | CG11963-RH | 931..1034 | 822..925 | 280 | 84.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5562234..5562875 | 927..286 | 3180 | 99.7 | Minus |
| 3L | 28110227 | 3L | 5563266..5563397 | 189..58 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 5563085..5563185 | 289..189 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 8941506..8941609 | 822..925 | 280 | 84.6 | Plus |
| 3L | 28110227 | 3L | 5563490..5563543 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:25:05 has no hits.
FMO02666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:38 Download gff for
FMO02666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10622-RA | 134..1293 | 1..1132 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:53 Download gff for
FMO02666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sucb-RA | 141..1300 | 1..1132 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:05 Download gff for
FMO02666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sucb-RA | 141..1300 | 1..1132 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:05 Download gff for
FMO02666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5562001..5562871 | 290..1132 | 95 | <- | Minus |
| 3L | 5563085..5563184 | 190..289 | 100 | <- | Minus |
| 3L | 5563266..5563395 | 60..189 | 100 | <- | Minus |
| 3L | 5563493..5563551 | 1..59 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:53 Download gff for
FMO02666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5555101..5555971 | 290..1132 | 95 | <- | Minus |
| arm_3L | 5556185..5556284 | 190..289 | 100 | <- | Minus |
| arm_3L | 5556366..5556495 | 60..189 | 100 | <- | Minus |
| arm_3L | 5556593..5556651 | 1..59 | 94 | | Minus |
