FMO02668.5prime Sequence
1216 bp (1048 high quality bases) assembled on 2008-05-23
> FMO02668.5prime
CAGTCGACATGATCACCATGACTTCGTTTATCGAACTGCTGGGACTTTTC
TTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATATTCCGATA
CTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAACTCGATCA
TCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCAATCTGCTA
TGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGCCTGCGATG
GGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTGCATCATTG
TGGCCAATCACCAAAGCTCGCTGGATGTGCTGGGCATGTTCAACATCTGG
CATGTGATGAACAAGTGCACAGTGGTGGCCAAACGAGAGCTCTTCTACGC
CTGGCCTTTTGGCTTGGCGGCATGGTTGGCTGGCCTAATCTTCATCGATC
GTGTGCGCGGCGAGAAGGCGCGCGAAACGCTAAACGATGTTAACCGGCGC
ATCAAGAAGCAACGTATCAAACTGTGGGTTTTCCCGGAGGGAACGCGCCG
CAATACGGGCGCACTGCATCCGTTCAAAAAGGGCGCCTTTCACATGGCCA
TCGATCAGCAGATACCCATTCTGCCGGTGGTCTTCTCCTCCTACTGCACA
TTCCTCAATGATAAGAAAAAGATTTTGAATTCGGGTCGCATTGTGATTAC
CACGCTGCCGCCGGTTAGCACCGAAGGACTAACCCAGGACGACATCGATG
TGCTAATGGAGCGTGTCCGCTCCCAGATGATTGAAACGTTCAAGGTGACG
TCTGCGGAGGCGTTGCATCGTTATAAGCCCATTAAAAGGTTGGAATTTCA
GCCGCCTCATCAGCATCAACATCATCTACGACACAACAACATTGGCATCA
CCGGGAACTGCTGTCACTCCCGTTGCGGATGCGGCAGTGCTGCCGCAGCT
GCCGTGCCAGTAGCAGTTCGCATACGGTCAACCGCCGGCTACGAAGCCGG
AGCCGCAAAGCCAGCTTGCTCAGACACTTGCAGCCTTTCTAGAACATTCG
TTGGCCGCCGGCCCAGTAAGGTGTCTAATCATAATCTATCATAATCTAAA
TCCACTAGCTTAGGAATCTGGTCATGACTAGTGCCTGAATCCCACATAAA
AGCCCCTGGCGCACTCGGAGCTCGCTTTGGAACAAATTCCAGAGTGGAAT
TTCTGTAGAGCCATAT
FMO02668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3812-RC | 3566 | CG3812-RC | 305..1333 | 9..1029 | 4915 | 99 | Plus |
| CG3812-RB | 3795 | CG3812-RB | 534..1562 | 9..1029 | 4915 | 99 | Plus |
| CG3812-RA | 1831 | CG3812-RA | 443..1471 | 9..1029 | 4915 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12769914..12770610 | 333..1022 | 3105 | 98.7 | Plus |
| X | 23542271 | X | 12767164..12767354 | 9..199 | 955 | 100 | Plus |
| X | 23542271 | X | 12769691..12769825 | 200..334 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:03:30 has no hits.
FMO02668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:39 Download gff for
FMO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RB | 525..1566 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:23 Download gff for
FMO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RA | 436..1477 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:55 Download gff for
FMO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3812-RA | 436..1477 | 1..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:55 Download gff for
FMO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12767157..12767354 | 1..199 | 97 | -> | Plus |
| X | 12769691..12769824 | 200..333 | 100 | -> | Plus |
| X | 12769915..12770624 | 334..1036 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:23 Download gff for
FMO02668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12661190..12661387 | 1..199 | 97 | -> | Plus |
| arm_X | 12663724..12663857 | 200..333 | 100 | -> | Plus |
| arm_X | 12663948..12664657 | 334..1036 | 98 | | Plus |
