FMO02669.5prime Sequence
1202 bp (1013 high quality bases) assembled on 2008-05-23
> FMO02669.5prime
CAGTCGACATGGTTGCCCAGAACTCCGACAAAATGCGGGCCCTGGCCCTG
AAGCTCTTCGAGATCAATGCCTTCAAGTTCGGCGACTTCAAGATGAAAGT
GGGCATAAATTCGCCGGTCTACTTCGACCTCCGAGTGATCGTCAGTTATC
CGGATGTGATGCAAACCGTATCCGACCTGCTGGTGGAACACATCAAGGAC
AAGCAGCTGAGCGCCAAACACGTGTGCGGTGTTCCCTACACGGCGCTCCC
GCTGGCCACCATTGTGTCCGTGCAGCAGGGAACTCCCATGCTGGTGCGGC
GCAAGGAGGCCAAGGCGTACGGCACCAAGAAGCTGGTCGAGGGCATCTTC
AATGCTGGCGACACCTGTCTGATTGTCGAGGACGTGGTCACCTCCGGCTC
CAGCATCCTGGACACGGTGCGGGATCTGCAAGGCGAGGGCATTGTGGTCA
CCGACGCCGTGGTCGTCGTAGACCGTGAGCAGGGCGGAGTGGCCAACATC
GCCAAGCACGGCGTGCGGATGCACTCGCTCTTCACGCTCTCCTTTCTGCT
GAACACACTTCACGAGGCCGGGCGCATCGAGAAGTCCACAGTGGAGGCGG
TGGCCAAGTACATCGCCGCCGTGCAAATCAACAGCGATGGTACCTTCGTC
GGCGGCGATAAGGGCGACGTTGTCAGAGCCAACGACTTGCAGCGCACTAA
ACTGACCTACGAGAATCGCGCCAATCTGGCTAAGAGCGCGGTGGCCAAGC
GCCTCTTCAACCTGATAGCCAGCAAACAGACGAACCTCTGCTTGGCCGCC
GACCTGACACACGCCGATGAGATCCTGGACGTGGCCGACAAGTGCGGTCC
GTACATTTGCCTGCTGAAGACGCACGTTAAACATTGTGAGGATTTCAGTG
ATAAATTTCATCGCTGACCTGCAAGCTCTGGGCCCAGCGGCACAATTTCC
TGCTGATGGAAGGATCGCAAGTTTGCAGACATCGGCAACCCGTGTTCCCT
GCAGTACGGCAAGGCATTCTATAAAATTTCCAGTTGGGCAGAATCTGGTC
CCGGCCACACCTTACTTGAACGTGTATTCTTGCAGATCTGAGGCGGCCCT
TGACAAAGAAGACCCGAAGAACCGCGGCTCTTCTGTTGCGAAGGCTGCCA
CGGAACTTGATCACCTCAGTACTGGGAAACGCACACAGAATTGCCACCCC
GT
FMO02669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r-l-RA | 2039 | CG3593-RA | 101..1194 | 8..1102 | 5015 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21072489..21073006 | 678..161 | 2590 | 100 | Minus |
| 3R | 32079331 | 3R | 21071433..21071826 | 1073..677 | 1465 | 95.2 | Minus |
| 3R | 32079331 | 3R | 21073066..21073219 | 161..8 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:05 has no hits.
FMO02669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:41 Download gff for
FMO02669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3593-RA | 96..1180 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:19 Download gff for
FMO02669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-l-RA | 98..1182 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:12 Download gff for
FMO02669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r-l-RA | 98..1182 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:12 Download gff for
FMO02669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21073066..21073222 | 1..161 | 97 | | Minus |
| 3R | 21071414..21071824 | 679..1091 | 94 | <- | Minus |
| 3R | 21072489..21073005 | 162..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:19 Download gff for
FMO02669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16897136..16897546 | 679..1091 | 94 | <- | Minus |
| arm_3R | 16898211..16898727 | 162..678 | 100 | <- | Minus |
| arm_3R | 16898788..16898944 | 1..161 | 97 | | Minus |
