FMO02672.5prime Sequence
1170 bp (994 high quality bases) assembled on 2008-05-23
> FMO02672.5prime
CAGTCGACATGTCGGAGGCAACTGTGGCCCAAAAGCCGGAGGCGGTGGAA
GATGTGAATGCGTCGACGGGGGACGAGAAGCAGACTCCCAAACGCACTCC
CAAACGCCGCTCGTTCATTGAGCGGGCGCAGAAGGAAAGCGAGGAGCTTG
TGCGAACAATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGG
TCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCC
ACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTG
CAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCC
GAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGG
AAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGG
CAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCA
AAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGT
GGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAG
TCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAA
GCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGC
TACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGG
ACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATAAAGAAAAG
GCATTAGATGACGAAAAAGAACCAGACAGAAGTCAGAGGAACATGCAGCA
GCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGAGCCCACACC
AGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGGACACTGCTC
AAGTAGACACACAGCATCGAAAACGTTCTGCCGCTCCAGAACGGAGCAGC
GCAAAGACTACGAGTCTAGCATGATGTGGTGGAGTGGCTACAGAAGGGCA
AAGAAACAGTTGATGCCGCTGCCCGAGCAAGGAAGCGAAGCACTGTAATT
CCGAAAGCTTACGATCGACTGGTTGTGACTGATCGAAAGAATGCCGTGAC
AGTAAAAGAGAGAACTCTCA
FMO02672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RA | 3015 | CG1910-RA | 364..1425 | 9..1061 | 4995 | 98.7 | Plus |
| CG1910-RD | 2698 | CG1910-RD | 127..1108 | 89..1061 | 4595 | 98.6 | Plus |
| CG1910-RC | 2628 | CG1910-RC | 58..1038 | 90..1061 | 4590 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31749578..31750246 | 402..1061 | 2780 | 97.5 | Plus |
| 3R | 32079331 | 3R | 31749207..31749522 | 90..405 | 1580 | 100 | Plus |
| 3R | 32079331 | 3R | 31748006..31748086 | 9..89 | 405 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2038..2139 | 817..919 | 116 | 61 | Plus |
FMO02672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:47:29 Download gff for
FMO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 362..1423 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:41 Download gff for
FMO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 364..1425 | 9..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:37 Download gff for
FMO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 364..1425 | 9..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:37 Download gff for
FMO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31748006..31748086 | 9..89 | 100 | -> | Plus |
| 3R | 31749207..31749521 | 90..404 | 100 | -> | Plus |
| 3R | 31749581..31750273 | 405..1081 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:41 Download gff for
FMO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27573728..27573808 | 9..89 | 100 | -> | Plus |
| arm_3R | 27574929..27575243 | 90..404 | 100 | -> | Plus |
| arm_3R | 27575303..27575995 | 405..1081 | 96 | -> | Plus |
