FMO02673.5prime Sequence
1207 bp (1049 high quality bases) assembled on 2008-05-23
> FMO02673.5prime
CAGTCGACATGCACGTGTACTACAAGTTTGGATTACTGCTGATATTTTTG
CTAAGCGTGAGCATCAGCCACACAAATGCCGCTCCAGCGGGCAGTGAGGA
GGCAAATCCCCTCGAGGACTTTAATTACGGCGATGATGACTACAGTGAAA
CAGCGACGGGCGAGGAATCGCCGGAGACAGCAGAAAATAGACTGATGCCA
CAATCATCCTCCACATCGACCACCACCACATTTCGACCAATATTTAATAT
ACCACGACGCAGCAACCATGTCCTGGAGCCCAGTTGCCCGCGCAACTGCC
TCTGCCTGGAGGACTTCAAGTTCGTTCAGTGTGCCAATGCCCATTTGACC
CATGTACCCCTGGACATGCCCAAAACGGCGGCCATCATCGATCTGAGCCA
TAATGTGATTGCCGAACTGAGGCCGGAGGATTTTGCCAATCTGTCCAGGG
CGGTGGAAATCAATTTGAATCACAATCTGATCAGCAGCATAGACAAGGAT
GTCTTTCAGGGATCGGAGCGTTTGAAGCGCCTGCGGCTGGCCAACAACCG
TCTAACCAAAATCGATCCCGACACCTTTGCGGCGGCCAAGGAACTAACGC
TACTCGATTTGAGCAACAACACCATAACCCAGCGCCTGGACGGATCCTTC
TTGAACCAGCCCGACTTGGTGGAGTTCAGCTGCGTCAACTGCAGCTGGAC
GGAACTGCCGGAACAGACGTTCCAGAACATGAGTGGCCTGGAGGTGTTGC
GCTTGAACAAGAACGATTTTAAACAGCAAATCAATACGAAAGCTTTCTCG
CCGCTAACAAAAATAATTAAACTGAAGCTGCCGGAACTGGAACACAGAAC
ATCGAGGAGCTGTGCAGCCTGCTGACCTCCATCGACACGATTAGCTTCCT
CAACTACGACATCAGCTGCTACGATTTCGTACTGGGCACCCCCTTTCAAC
GGCAGTCTCATCTATCCCACGGAGCCGCCGCTCATGGGAATACAATCCGC
CCATCGTCGCAGCATCACCAGCACTGCAAAGCCAGTGACCGCAACCCCGC
ACGCCAGGAGGGCCATCGAATCGGGCAATGGACAAACAGCACGGAACTTG
GTTCAAGCGGATCCTGACTCCGAGAACCAGCACAAGCGGAATTCAGTGAC
GCCTGTCGAAGCAGACCATTCAGGGTGCATATCTCCTCAGAGAGGCCACA
CACAGCC
FMO02673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42709-RC | 2053 | CG42709-RC | 205..1408 | 9..1198 | 5145 | 96.5 | Plus |
| CG42709-RA | 2186 | CG42709-RA | 338..1541 | 9..1198 | 5145 | 96.5 | Plus |
| CG42709-RB | 2212 | CG42709-RB | 364..1567 | 9..1198 | 5145 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12794381..12794656 | 501..776 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 12794062..12794317 | 247..502 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 12794793..12795065 | 773..1042 | 1080 | 96.4 | Plus |
| 3L | 28110227 | 3L | 12793814..12794000 | 60..246 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 12791581..12791633 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:39:50 has no hits.
FMO02673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:00 Download gff for
FMO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17667-RB | 716..1752 | 9..1042 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:49 Download gff for
FMO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1400 | 9..1042 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:07 Download gff for
FMO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42709-RB | 364..1400 | 9..1042 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:07 Download gff for
FMO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12791581..12791633 | 9..61 | 100 | -> | Plus |
| 3L | 12793816..12794000 | 62..246 | 100 | -> | Plus |
| 3L | 12794062..12794315 | 247..500 | 100 | -> | Plus |
| 3L | 12794381..12794656 | 501..776 | 100 | -> | Plus |
| 3L | 12794797..12795065 | 777..1042 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:49 Download gff for
FMO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12784681..12784733 | 9..61 | 100 | -> | Plus |
| arm_3L | 12786916..12787100 | 62..246 | 100 | -> | Plus |
| arm_3L | 12787162..12787415 | 247..500 | 100 | -> | Plus |
| arm_3L | 12787481..12787756 | 501..776 | 100 | -> | Plus |
| arm_3L | 12787897..12788165 | 777..1042 | 97 | == | Plus |
