FMO02676.5prime Sequence
1224 bp (981 high quality bases) assembled on 2008-05-23
> FMO02676.5prime
CAGTCGACATGGCCACCTCATCGATACTCGCCAAAAGCACAATTAATAGC
ACATCGCCACCGGCCACGCCCAGCAGCAGCGCGTCCCCCGGCTCCACACT
GACCACCCGGAAGCGGACCTACGAGATAGCCATTGCCATGCCCTCGTCCA
CCGCCTCCAGCAGCGCCACAAAGGTATCGGAAGTTCAGGATCAGCGCACA
AACAGCCCCGGCAAGTCCAAGAGCAGGCCCGGCCAGCTGGAGAGTGTCTT
GGTGGTCGGCGAGGGAGCCAGCGAGCCCACCACCTCGGCCACCACACTGC
GGGACAGCACACGCACCATCTCACAAAGCGACGCCGACGATGGCGGCGAA
GCGGCAGCCGCCGAGGACCTGCTGCCCCCACAGTCGGATTACCTCAACGG
CGTCAAGCGGAAGTACGTCCCGCAGCAGCAGGCGTCGCCGAATCACCGGG
TGGTGCCCGCATCCACCTCGCAGCAATTCTTCAGCGGGGCCTCCGATTTT
GCGACAATTTGCAAGCCGGCGCCCTACTCTCACGACGAGGAGGCCATGCT
GGAGCGGGATAGATGTGACTACACTCAAAGGATCACCTACCAGATGGCCC
GCTCCGGACAGACGACCCGCAGGGTGAGGGTCTACGCCGATGGCATCTAC
GATCTTTTCCACCAGGGCCACGCCCGCCAACTAATGCAGGCCAAGAACAT
CTTTCCCAACGTGTACTTAATTGTGGGCGTGTGCAACGACGAGCTCACCC
ACCGCATGAAGGGACGCACCGTGATGAACGGCTTCGAGCGATACGAGGGA
GTGCGTCACTGCCGCTATGTGGACGAGATCGTCCAGAATGCGCCATGGAC
TCTGTCCGATGAATTCATCGCCGACAACAAAATCGACTTTGTGGCCCACG
ACGACATTCCGTATGTAACCGATGGCATGGACGACATCTATGCTCCTCTT
CAAGGGCGCGCGGCATGTTTTGTGGCCACGGAGCGCACTGGAGGTGTGTC
CACCTCCGACACATCGTAGCCCGGATCGTCAAGGATACGATCTGTATGTG
CGTCGTATCTGCAGAGGCTATTCGGCCAAGGAACTCATGTGTCGTCTGTT
CCAAAAAAAGTCCCGGCTGCGAAACAGAATGAACGACCTGAAGTTCGCCG
CGCAGCGGACTGAACCAGTGACGTGAACCTCTCACCCATGGGAGAGGAGT
GCGCAAAATCTCTACGAATACCTC
FMO02676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct1-RF | 2754 | CG1049-RF | 296..1433 | 9..1144 | 5235 | 97.7 | Plus |
| Cct1-RE | 2564 | CG1049-RE | 374..1511 | 9..1144 | 5235 | 97.7 | Plus |
| Cct1-RC | 2302 | CG1049-RC | 112..1249 | 9..1144 | 5235 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1550794..1551288 | 9..503 | 2475 | 100 | Plus |
| 3L | 28110227 | 3L | 1551477..1551801 | 503..827 | 1625 | 100 | Plus |
| 3L | 28110227 | 3L | 1551863..1552183 | 826..1144 | 930 | 91.4 | Plus |
| 3L | 28110227 | 3L | 1554081..1554401 | 507..827 | 720 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:58 has no hits.
FMO02676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:33 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:22 Download gff for
FMO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RB | 212..1306 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:57 Download gff for
FMO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct1-RC | 107..1201 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:57 Download gff for
FMO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1550789..1551288 | 1..503 | 99 | -> | Plus |
| 3L | 1551478..1551801 | 504..827 | 100 | -> | Plus |
| 3L | 1551865..1552154 | 828..1115 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:22 Download gff for
FMO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1550789..1551288 | 1..503 | 99 | -> | Plus |
| arm_3L | 1551478..1551801 | 504..827 | 100 | -> | Plus |
| arm_3L | 1551865..1552154 | 828..1115 | 93 | -> | Plus |
