FMO02679.5prime Sequence
806 bp (806 high quality bases) assembled on 2008-05-23
> FMO02679.5prime
CAGTCGACATGTCGGAAGTTGAATCGCAGCAGAGCCAGGAGACGAACGGC
AGCAGTAAATTCGATGTGCCCGAGATAGAATTGATCATAAAGGCCTCGAC
CATCGACGGCAGGCGGAAGGGCGCCTGTTTGTTCTGCCAGGAGTACTTCA
TGGACCTATATCTACTGGCCGAACTGAAGACGATCAGCCTGAAGGTGACG
ACGGTGGATATGCAGAAGCCGCCGCCCGATTTCCGTACCAATTTTGAGGC
CACACACCCGCCCATCCTCATTGACAATGGGCTGGCCATTTTGGAGAACG
AAAAGATCGAGCGGCACATCATGAAGAACATACCGGGCGGCTACAATCTG
TTTGTCCAGGACAAGGAGGTGGCCACCCTGATCGAGAACCTGTATGTCAA
GTTGAAGCTGATGCTGGTAAAGAAGGACGAGGCCAAGAACAACGCCCTGC
TCTCGCATCTGCGCAAGATCAACGATCATCTGTCCGCGCGCAACACGCGC
TTCCTCACCGGCGACACCATGTGCTGCTTCGACTGTGAGCTGATGCCGCG
CCTGCAGCACATCCGTGTGGCGGGCAAGTACTTTGTCGACTTTGAAATCC
CGACGCACTTGACGGCCCTGTGGCGCTACATGTATCACATGTACCAGCTG
GACGCCTTCACACAATCGTGCCCGGCCGACCAGGACATTATCAATCACTA
CAAGCTGCAACAGAGTCTCAAAATGAAGAAGCACGAGGAGCTGGAGACGC
CCACGTTTACCACATACATTCCAATTGATATTTCGGAGGCAAGCTTTCTA
GACCAT
FMO02679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clic-RC | 1349 | CG10997-RC | 300..1079 | 9..788 | 3900 | 100 | Plus |
| Clic-RA | 1839 | CG10997-RA | 300..1079 | 9..788 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13814377..13814888 | 602..91 | 2560 | 100 | Minus |
| X | 23542271 | X | 13813875..13813986 | 713..602 | 560 | 100 | Minus |
| X | 23542271 | X | 13821924..13822008 | 93..9 | 425 | 100 | Minus |
| X | 23542271 | X | 13813731..13813808 | 788..711 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:15 has no hits.
FMO02679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:09 Download gff for
FMO02679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10997-RA | 310..1104 | 1..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:25 Download gff for
FMO02679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clic-RA | 293..1087 | 1..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:16 Download gff for
FMO02679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clic-RA | 293..1087 | 1..798 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:16 Download gff for
FMO02679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13813723..13813805 | 714..798 | 95 | <- | Minus |
| X | 13813875..13813985 | 603..713 | 100 | <- | Minus |
| X | 13814377..13814886 | 93..602 | 100 | <- | Minus |
| X | 13821925..13822012 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:25 Download gff for
FMO02679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13707756..13707838 | 714..798 | 95 | <- | Minus |
| arm_X | 13707908..13708018 | 603..713 | 100 | <- | Minus |
| arm_X | 13708410..13708919 | 93..602 | 100 | <- | Minus |
| arm_X | 13715958..13716045 | 1..92 | 95 | | Minus |
