FMO02680.5prime Sequence
1208 bp (1019 high quality bases) assembled on 2008-05-23
> FMO02680.5prime
CAGTCGACATGTCCCACCACAGCGATGATCAGCTCCTCCAGGCTGGAAGC
GATTCCTTCTGGGAGCCCGGCAACTACAAACGCACCACCAAGCGGATCGA
GGATGGTTACAAACTCTGCAATGACCTACAGCAACTGATTCAGGAGCGTG
CCGACATCGAGAAGGGATATGCGAAAAGCCTGCGCACCTGGTCAAAGAAA
TGGGGTGAACTCATTGAGAAAGGCCCGGAATACGGAACCACGGAGGCAGC
CTGGAAGGGCGTTCTGACGGAATCGGAACGCATCTCCGACGTTCACATGA
AGATCAAGGACAATCTCTGCAACGATGTGAACAGCCAGATAAAGACGTGG
CAGAAGGAGAACTACCACCACACGCTTATGCAGATCAAGGAGCGCAAGGA
CCTGGAGGATCTGTTCAAGAAGGCCCAGAAACCCTGGGCCAAGCTGCTGG
CAAAGGTCGAGAAGGCCAAAGCGGACTACCATTCGGCCTGCAAGACGGAG
CGCAGTGCTACCAATCAGGAACGCAATGCCAATGCCGATAGCTCGTTGTC
GCCGGATCAGGTGAAGAAAATGCACGATCGAGTGCAAAAGACCAAAGATC
AAGTGCAAAAGTGCCGGGAAAAGTACGAGCAGGCGATTGCCGAAATCACC
AAATACAATTCGGTGTACATCGAGGACATGACATCCGTGTTTGAAAAGTG
CCAAACCTTTGAGAAGACGCGTTTGCAGTTCTTCAAAGAAATCCTGTTCA
ACGTGCACTCGTGCCTGGACCTCACAAAAGTGCAAAGCCTGCCCCAAATC
TACGAGGAGTTCTCCCACACGATCAACAATGCAGACCAGCAGAAAGACCT
AAAATGGTGGTCGAACATCATGGCATTAACATGGCCATGAATTGGCCATC
ATTTGTGATATACGGAGGAGTTCCGTGACATTGCCAAGGGCAACAAATCA
AAGAGGCACTGCCGGCAGCACCCATCACGCTCATCAACACGACTGGTGGC
GAGGATGTGCACGATACCTCAGACAACAGCTGAGAGACACCAGCACCTTG
AGCAGTGTCAGCAGCGAGCGAGGTGTGAAAGCGAAATAGCGACACGCAAT
CCTCAGTCACCATTCGAGCAAAATCGTCGGCGGTGCGGCTTGCACGACAC
GGGACAGAACAGGGCGGCTCGCGCATCTAAGTCCCACACTTCGAGCGTAT
AACCAATG
FMO02680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synd-RB | 2022 | CG33094-RB | 79..1198 | 9..1112 | 5120 | 98.1 | Plus |
| Synd-RD | 2287 | CG33094-RD | 79..1201 | 9..1112 | 5080 | 97.9 | Plus |
| Synd-RC | 2281 | CG33094-RC | 73..1195 | 9..1112 | 5080 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20837583..20837924 | 221..562 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 20838033..20838261 | 559..787 | 1145 | 100 | Plus |
| 3R | 32079331 | 3R | 20838323..20838445 | 786..907 | 565 | 99.2 | Plus |
| 3R | 32079331 | 3R | 20835875..20835985 | 113..223 | 555 | 100 | Plus |
| 3R | 32079331 | 3R | 20835228..20835331 | 9..112 | 520 | 100 | Plus |
| 3R | 32079331 | 3R | 20838515..20838596 | 908..988 | 360 | 98.8 | Plus |
| 3R | 32079331 | 3R | 20838710..20838787 | 1037..1112 | 200 | 89.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:58 has no hits.
FMO02680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:12 Download gff for
FMO02680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33094-RB | 85..1220 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:15 Download gff for
FMO02680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 71..1206 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:32 Download gff for
FMO02680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synd-RB | 71..1206 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:32 Download gff for
FMO02680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20838035..20838261 | 561..787 | 100 | -> | Plus |
| 3R | 20838325..20838445 | 788..907 | 99 | -> | Plus |
| 3R | 20835222..20835331 | 1..112 | 97 | -> | Plus |
| 3R | 20835875..20835984 | 113..222 | 100 | -> | Plus |
| 3R | 20837585..20837922 | 223..560 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:15 Download gff for
FMO02680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16660944..16661053 | 1..112 | 97 | -> | Plus |
| arm_3R | 16661597..16661706 | 113..222 | 100 | -> | Plus |
| arm_3R | 16663307..16663644 | 223..560 | 100 | -> | Plus |
| arm_3R | 16663757..16663983 | 561..787 | 100 | -> | Plus |
| arm_3R | 16664047..16664167 | 788..907 | 99 | -> | Plus |
