FMO02686.5prime Sequence
1175 bp (1022 high quality bases) assembled on 2008-05-23
> FMO02686.5prime
CAGTCGACATGGCTTTCACAATGCAAACCGGGGATCTGAAGAAGCTGAAG
TACTTCATCGACTTTGCGCTTGAGAATCCCACCTTCTTGAACATGCCGCA
GCTGCAGTTCGTCAAAGATTTCGTGGAGAAGTTTGGTGGCACGGTGCCGC
CTGGCCAATTCAACGGTGGCAGCGCCGGAGGCAAGTGCCCATTCGGCGGT
GTTGCTGGTGCCAAGGCCAACGAGCCGGCCAATGCCCCCGAGGATAGCGA
GGACGAAAAGTCCCTCTCCGATCCTGAGTCGGACGTGGAGCTGGACATGG
AGGGTGTGATCGAGGCGGACAGCGACCCCGCCCAACCCATGGGCAACTAC
AGCAAGAAGGCCACCGAAGAGGAGGTGGAGCAGGCGAGCGAGCTGCGCGC
CCAGGCGGCCTCCGCTTACGGCCAGCAGAAGTTCGACGAGGCCATCGCCT
TGTACACCAAGGCCATTGAACTGAGCCCGGGTAATGCCCTTTTCCACGCT
AAGCGTGGTCAGGCCTTCCTCAAGCTGAAGAAGCCGAATGCCTGCATTCG
GGACTGCGACGTGGCGCTGGAACTCAACTCGGATTTGGCGGCTGGCTACA
AGTTCAGGGGACGCGCCCGTCGCCTCCTCGGAGATTTTGAGCTGGCTGCC
CATGATTTGCGCCAAGCATGCAAGCTGGACTTTGACGAGGAGACAGACGA
GTGGCTAAAGGAGGTCACTCCGAATGCCAAGAAAATCGAGCAGCATCGCT
TGAAGCAGGAGCGTCGCCAGGCAGAGCGTAAGATCAAGGAACGCCAGCGG
GATCAGAGGCGCGCACGTAAAGAGCAGGAAAAGCACATGCCAGCTCTGGT
GGATCATCTGGAGAATTTTCCGGTGGGAATCCTGGTAACGGAAATATGTC
TGATATACTGGCGCCATGTCAGATCCCGAGGTGTCAGCCGCCATTCAGAC
ATTTTGTCAAATCCGGGTAACATCACAAAGTACGCGTCGACCCGAAGATT
TACAACTTATCAGAGATTGTGCCCGGTGGAGATTGTGGTGCTGCCTTGGC
AAGCGGTGAAGCTGAAAGCCGACGAGCTAGCTTAGAGACTCCGCCGACTC
CGTCAGTGACGGTTGACTAGCTTCGACCATGTGGGCGCGGGTCCAGGAAT
GTCAAATACTAATCATATTCATATA
FMO02686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HIP-R-RD | 2006 | CG2947-RD | 64..1189 | 9..1114 | 5020 | 97.4 | Plus |
| HIP-R-RB | 2065 | CG2947-RB | 123..1248 | 9..1114 | 5020 | 97.4 | Plus |
| HIP-R-RA | 2085 | CG2947-RA | 143..1268 | 9..1114 | 5020 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3790755..3791402 | 303..948 | 3125 | 99.5 | Plus |
| X | 23542271 | X | 3799838..3800485 | 303..948 | 3125 | 99.5 | Plus |
| X | 23542271 | X | 3790164..3790336 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3799247..3799419 | 9..181 | 865 | 100 | Plus |
| X | 23542271 | X | 3799499..3799624 | 181..306 | 630 | 100 | Plus |
| X | 23542271 | X | 3790416..3790541 | 181..306 | 630 | 100 | Plus |
| X | 23542271 | X | 3791477..3791580 | 948..1047 | 280 | 91.3 | Plus |
| X | 23542271 | X | 3800560..3800663 | 948..1047 | 280 | 91.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:25:28 has no hits.
FMO02686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:15 Download gff for
FMO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2947-RA | 66..1106 | 1..1033 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:06 Download gff for
FMO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-R-RA | 134..1174 | 1..1033 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:15 Download gff for
FMO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HIP-R-RA | 134..1174 | 1..1033 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:15 Download gff for
FMO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3790155..3790336 | 1..181 | 97 | -> | Plus |
| X | 3790417..3790538 | 182..303 | 100 | -> | Plus |
| X | 3790756..3791402 | 304..947 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:06 Download gff for
FMO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3684188..3684369 | 1..181 | 97 | -> | Plus |
| arm_X | 3684450..3684571 | 182..303 | 100 | -> | Plus |
| arm_X | 3684789..3685435 | 304..947 | 99 | -> | Plus |
