FMO02689.5prime Sequence
961 bp (955 high quality bases) assembled on 2008-05-23
> FMO02689.5prime
CAGTCGACATGGGCCCAATTCAAAGGTTGGTGTACACATTTGGTCATCGC
ACCTGTAGCCAATTGCCGATGATCGGCGGAGCAACGATATCCCAAACAAA
ACCAACAACAATGGCTCTCTCCGTTCGCCAATCCTCCTCCTCCGTGCTGG
CCACGGAGTCCTCTAACAAGGGAATGATTATTCTGAACCGGCCCAAGGCG
CTTAACGCCATCAACTTGGAGATGGTACGCAAGATCTACAAGCACCTGAA
GAAGTGCGAGAAGTCCAAGTCGCTGGTGATCATCAAGGGCACAGGTGACA
AGGCCTTCTGCGCCGGTGGAGATGTGCGCGCTCTGGTCGAGGCTGGCCCT
ACGGATGAGTCGAAGAGCTTCTTCCGGGAGGAGTACAGCACGAATGCCCT
GATCGGAAACTATAAGATTCCCTACATCGCCATCATTGACGGTATTACCA
TGGGCGGTGGCGTGGGTCTGAGTGTGCATGGCAAGTACCGGGTGGCCAGC
GATCGGACACTGTTCGCCATGCCCGAGACGGCGATTGGCCTCTTCCCGGA
TGTGGGTGGATCATACTTCCTGCCTCGACTGCAGGGAAAGCTGGGCCTCT
ATCTGGGTCTCACAGGATATCGACTGCGCGGAGCCGATGTCTATTACTCA
GCATTGCTACGCACTACTGCGAGAGCAGCAAGATCCCTGATCTGGAGACG
GCTCTCCTTAACTGCCCGGATGCGGATGATGTGCCTGAGCTGCTGCAGAA
GTACCATTCCCCGCCAGAAAAGCCCTTCTCGCTGCAGCCTGTCCTGGAGC
AGATCAACAAGAACTTTTCAGCGGACTCGGTGGAGGGGATTCTAGAGAAT
CTGCAGAACGATGGCAGTGAATGGGCAAGAAGACGCTTGAGATGCTCTCG
AGATGTCTCCCACCTCCGATGAAGGTTACGTTCCGTCAGTTGGAACTTCG
GATCACAGCTG
FMO02689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5044-RA | 1699 | CG5044-RA | 90..1043 | 9..961 | 4625 | 99.3 | Plus |
| CG5044-RB | 1702 | CG5044-RB | 95..1046 | 11..961 | 4615 | 99.3 | Plus |
| ldlCp-RA | 3015 | CG6177-RA | 2889..2959 | 961..890 | 260 | 93.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15357392..15358274 | 11..891 | 4315 | 99.8 | Plus |
| 3R | 32079331 | 3R | 15358549..15358607 | 901..961 | 190 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:36 has no hits.
FMO02689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:58 Download gff for
FMO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RA | 65..1027 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:22 Download gff for
FMO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RA | 81..1043 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:14 Download gff for
FMO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5044-RA | 81..1043 | 1..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:14 Download gff for
FMO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15357382..15358274 | 1..891 | 99 | -> | Plus |
| 3R | 15358539..15358607 | 892..961 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:22 Download gff for
FMO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11183104..11183996 | 1..891 | 99 | -> | Plus |
| arm_3R | 11184261..11184329 | 892..961 | 92 | | Plus |
