FMO02696.5prime Sequence
1110 bp (951 high quality bases) assembled on 2008-05-23
> FMO02696.5prime
CAGTCGACATGGGTGAATTGCAAGCGGGAAAATCGCCCTTTAAGACAAGA
AACACCTTTGATGAAAACTTAAAGATCTGGAGTGGTGGCGAAAAACGCAG
TTTATTCTCACCAGATTTGTCCATTGGAGAAATTATCTTTCAACAAATGG
AGCGCAATGCTATGCTCACTGCCCAGATTTCAGTTACAGAAAACACTGAG
CTGACCTGGAAAGACATCCAGACAAACGCGATGAAGGTGGCAAGTTATAT
GCGTAAACTGGGTCTGGAGCAAGGTGACTTTGTGGGAGTCATTGGCAGGT
TGACCACTCACTTGACTGCTCTGGCCTATGCCTGTTTCTTTAATGGAACT
CCTTATCATGCCCTACACACCGAATACGAACAATCTGCCATCGAGAGACT
GTTCGGAATAACCAAGCCACGCTTAATCTTCTGTGATGGAGATGAGTTTG
AGAAAGTTCAAGCAGCCACCAAAGGCCTTCAGGTACAAATAGTAACCATG
CGTAATCACCCGGCAGGAATATTGAGAATTCAGGATATTTTAACCACTCC
CGTGGAGATGAACTTTCGACCAGTGCGACTGAAAGACGGTACTGATCAAC
TACTGGCCATTCTTAGCTCTTCGGGAACATCCGGCCTTCCAAAGGCAGTC
ACCATTAGCAATAGTCACCAGATTATTGGGAGTTTTCTACCCGTGGATAG
CTCGATTATTCAGTATAACCCAAACACTTTGGATTGGGCATCAGGCATCA
CGATGACCATCAATGCAGCCGTGTTTTAGCTTGACTAGTATAATTGAAGA
TTGTGACTTTGATCCTGCCAATTTGTGTGGCCTAATTGAGAAGTATCGAA
TATCGATGGTGTTCGTAAGTTCCTCGCAATGGCGATGCTGTTCAATTGCC
CGGAATTCTATGGCGGCGGACCTATTCATCCGTGAAGTATTTCTTTTTAC
GGACGATCAACTGCTCACTGGAAGTCCAGACCAAATTCGCAGCCGTCTAG
GCACGAATGTTGTAATTTCAGTTAAACACTTACCGGAGTTGAACAGCCCG
GATGCCTAAACTCAACTTCGATGGAAAATCCAATCAAGGGGTCGTCTGGG
TTAGAGAGGA
FMO02696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5568-RA | 1911 | CG5568-RA | 98..1196 | 9..1106 | 4960 | 97.5 | Plus |
| CG18586-RB | 1817 | CG18586-RB | 152..771 | 59..678 | 505 | 72.9 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 524..965 | 237..678 | 485 | 74.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5871820..5872333 | 175..688 | 2570 | 100 | Plus |
| 3L | 28110227 | 3L | 5872385..5872781 | 689..1084 | 1265 | 94 | Plus |
| 3L | 28110227 | 3L | 5871598..5871765 | 9..176 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 5873918..5874359 | 237..678 | 470 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:06 has no hits.
FMO02696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:42:57 Download gff for
FMO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 97..1173 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:08 Download gff for
FMO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..1174 | 9..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:14 Download gff for
FMO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5568-RA | 98..1174 | 9..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:14 Download gff for
FMO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5871598..5871765 | 9..176 | 100 | -> | Plus |
| 3L | 5871822..5872333 | 177..688 | 100 | -> | Plus |
| 3L | 5872385..5872781 | 689..1084 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:08 Download gff for
FMO02696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5864698..5864865 | 9..176 | 100 | -> | Plus |
| arm_3L | 5864922..5865433 | 177..688 | 100 | -> | Plus |
| arm_3L | 5865485..5865881 | 689..1084 | 94 | | Plus |
