FMO02703.5prime Sequence
1236 bp (1033 high quality bases) assembled on 2008-05-23
> FMO02703.5prime
CAGTCGACATGGCCCAGAACACGGCCGACACTCTCATCCACCTGATCGCC
GGCGGATCCGCTGGCACAGTGGGTGCCGTTGTCACATGCCCCCTGGAGGT
GGTGAAGACTCGCCTGCAGAGCTCCACGGCGTTCATGACGCCGTCGCGGC
TGGCGGAGAATGCCGGAGGAGGACCGGCGAACGGTGGCCAATCGGAGCTG
CTGCGGCCGGAACAACGACGTAAGCTAAGCACAACGATATTACGTAACAG
ATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGATCATGGCCATTTCAC
ACTGCGGCATCTCATCCACAACGCCCAAATCCATGAGCATCGTGCAGTGC
CTGCGGCACATTGTCCAGAACGAGGGTCCACGCGCCCTGTTCAAGGGTCT
GGGTCCGAATCTCGTGGGCGTGGCCCCATCCCGTGCCATTTACTTCTGCA
CCTACTCGCAAACCAAAAACACGCTCAACAGTCTGGGCTTTGTTGAACGT
GACTCGCCACTGGTGCACATCATGAGTGCAGCGAGTGCCGGCTTTGTCTC
CTCCACGGCAACGAATCCCATTTGGTTTGTGAAGACGCGAATGCAGCTGG
ACTACAACTCCAAGGTGCAGATGACCGTGAGGCAGTGCATCGAGAGGGTG
TACGCCCAGGGAGGCGTGGCGGCCTTCTACAAGGGCATCACGGCCAGCTA
CTTTGGAATCTGCGAGACGATGGTGCACTTTGTCATCTACGAGTTTATCA
AGTCCAAGTTGCTAGAGCAGCGAAATCAGCGGCATACGGACACCAAGGGA
TCCCGCGACTTTCTGGAGTTCATGATGGCTGGCGCTGTTTCCAAACCATC
GCCTCCTGCATCGGCTATCCCCACGAAGTGGCCCGCACTCGTCTGCGGGA
GGAGGGCAACAAATACAACTCCTTCTGGCAGACCCTGCACACTGTTTGGA
AAGAAGGAGGGCAGAGCAGACTCTACAGAGGCTTGGCCACCGCAGCTGGT
GGCGACAGATTCCCAACACGGCGATCATGATGGCCACCTATGAGGCGGTT
CGTCTATGGTGCTCAGGCGCGGCGCTTCCACCACAATTCGAACGACTCCT
ACGACTTTGCAGCTTTCTAGAACATCGGTTGGGCCGCCGCGGGGCCAGGT
AAGTGGTCTAATCTAGTCTATCTATCCTATATCCACTAACTAGAGAGATC
CCTGGCTGTCGTCACTATAGTGCGCTGTGAGTACAA
FMO02703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rim2-RA | 1762 | CG18317-RA | 461..1555 | 9..1108 | 5175 | 98.5 | Plus |
| Rim2-RC | 2396 | CG18317-RC | 461..1534 | 9..1108 | 4850 | 96.6 | Plus |
| Rim2-RD | 2352 | CG18317-RD | 672..1490 | 285..1108 | 3795 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1717878..1718152 | 761..487 | 1375 | 100 | Minus |
| 2L | 23513712 | 2L | 1718675..1718904 | 284..55 | 1150 | 100 | Minus |
| 2L | 23513712 | 2L | 1717608..1717816 | 969..761 | 905 | 97.6 | Minus |
| 2L | 23513712 | 2L | 1718227..1718359 | 487..355 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 1718420..1718492 | 356..284 | 365 | 100 | Minus |
| 2L | 23513712 | 2L | 1717106..1717233 | 1108..975 | 330 | 91.8 | Minus |
| 2L | 23513712 | 2L | 1723882..1723928 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:12 has no hits.
FMO02703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:33 Download gff for
FMO02703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18317-RA | 456..1561 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:23 Download gff for
FMO02703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18317-RA | 453..1558 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:51 Download gff for
FMO02703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rim2-RA | 453..1558 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:51 Download gff for
FMO02703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1717598..1717815 | 762..978 | 97 | <- | Minus |
| 2L | 1717878..1718151 | 488..761 | 100 | <- | Minus |
| 2L | 1718227..1718358 | 356..487 | 100 | <- | Minus |
| 2L | 1718421..1718491 | 285..355 | 100 | <- | Minus |
| 2L | 1718675..1718903 | 56..284 | 100 | <- | Minus |
| 2L | 1723882..1723936 | 1..55 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:23 Download gff for
FMO02703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1717598..1717815 | 762..978 | 97 | <- | Minus |
| arm_2L | 1717878..1718151 | 488..761 | 100 | <- | Minus |
| arm_2L | 1718227..1718358 | 356..487 | 100 | <- | Minus |
| arm_2L | 1718421..1718491 | 285..355 | 100 | <- | Minus |
| arm_2L | 1718675..1718903 | 56..284 | 100 | <- | Minus |
| arm_2L | 1723882..1723936 | 1..55 | 92 | | Minus |
