FMO02705.5prime Sequence
1241 bp (1003 high quality bases) assembled on 2008-05-23
> FMO02705.5prime
AAAAAACGAAGTTATCAGTCGACATGTCGAATACCTGGTGGTGGCTTTCA
GTAGTGTTACTAATCTTAGGGCTAATGCCTGGCATGAGTCAGCAGGCGGC
CCTGGCCGAATCGGATTACTATACGGCCGGAGTGGTGGAGTTCAAACAGT
CGATCTTAAGTCTATCGGCCTGGTCGGATTCCCTTGCTGGCTATGTGGAG
ATCATAAACTCTGAGAACGCCAGTGCCACCGACATCATTGTGTTTCCCGA
GAGCACACTGAACTCCGCGGGTTCCACGACCTTTGTGCCCAATCCCGAGG
ATCAGATAAACCCGTGTTTGAGTGACCCCAATGCCACCTACTATGAGGAG
TTTCTGGTGACCCTGTCGTGCGCGGCCCGCAATGCCAGTAAATACATTGT
GATCAATCTGACCGAGAAGCAAAAGTGCGAGGATATTCCCGAGGATACGA
GGCCATGTGCATCTAACGGACTGAATGTTTTCAACACCAATGTAGTGTTC
GATCGTCAGGGAGTCGTGGTGTCCAGGTACCGAAAGGTTCATCTCTATGG
TGAAGCAAAGAACAGCACTTTTCTGCCCGAGCTGATCACCTTCGAGACAG
ACTTTGGGGTCACCTTCGGTCATTTCATCTGCTTCGACATCCTGTTCTAC
ACTCCCGCCCATCAACTCATCGTGGAGCAGGGTATTACGGACTTCGTGTA
TCCGGCCATGTGGTTCTCCCAACTGCCCTTCCTCACGGCTGTTCAGACGC
AACAAGGTTGGGCCTATGCCAACGATGTGAATCTCCTGGCGTCTGGAGCC
AGTCGTCCCTCCATTGGCAATAGTGGATCGGGCATCTATCACGGACGTTC
CGGCACTTTGACCAGTGTCATGCGCCAGGACTCCGGCGAGAGGGCCATCT
ATGTGGCCCAGGTGCCCAAGTATACTCGCAGTAGATCCCTGAAGAACGTG
CGAGAGGAGTCTACAGGAGATCCAAACCCGTCAGGTGGCCTCAAGCTCGA
GTTCTACATGAAGCCGCGATTACGTTGGGACTATTGAGTCTGAGTTGCTC
CAGTTGGACGAGGAACTTAGTGGGTGCTATCAATAGACCATCTGCCAGGG
CACCTTTTGCTTGTACTTCGCAACAATACTTGGAAATCTTGGGCACAGCG
ACGGGAATTGGAAGCTACTTAGCATCGATTGGGAACCTACACAGGCTGGG
GCCCGCAGAAAGAGGTGGTGACTCCAATTTATAACCGCAAA
FMO02705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vanin-like-RA | 1864 | CG32754-RA | 14..1187 | 20..1190 | 5265 | 97.5 | Plus |
| CG32751-RA | 1603 | CG32751-RA | 187..920 | 186..919 | 2620 | 90.5 | Plus |
| CG32751-RB | 1758 | CG32751-RB | 187..944 | 186..919 | 2375 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6201764..6202409 | 738..93 | 3230 | 100 | Minus |
| X | 23542271 | X | 6197862..6198412 | 736..186 | 2350 | 95.1 | Minus |
| X | 23542271 | X | 6201008..6201387 | 1111..734 | 1430 | 95.3 | Minus |
| X | 23542271 | X | 6202470..6202546 | 96..20 | 370 | 98.7 | Minus |
| X | 23542271 | X | 6197447..6197610 | 919..756 | 280 | 78 | Minus |
| X | 23542271 | X | 6218525..6218578 | 649..596 | 195 | 90.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:12 has no hits.
FMO02705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:36 Download gff for
FMO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32754-RA | 10..1107 | 16..1111 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:58 Download gff for
FMO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vanin-like-RA | 10..1107 | 16..1111 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:02 Download gff for
FMO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vanin-like-RA | 10..1107 | 16..1111 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:02 Download gff for
FMO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6201008..6201382 | 739..1111 | 96 | <- | Minus |
| X | 6201764..6202406 | 96..738 | 100 | <- | Minus |
| X | 6202471..6202550 | 16..95 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:58 Download gff for
FMO02705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6095041..6095415 | 739..1111 | 96 | <- | Minus |
| arm_X | 6095797..6096439 | 96..738 | 100 | <- | Minus |
| arm_X | 6096504..6096583 | 16..95 | 96 | | Minus |
