FMO02707.5prime Sequence
1256 bp (1046 high quality bases) assembled on 2008-05-23
> FMO02707.5prime
CAGTCGACATGCCAGTGCAGCAAGTGCGTCCCGTGAGCACCTACGACAAC
TTGGGCGTCTCTCAGTCCAGGCAGCTGACGGCCGGAATGGCTGGCGAACC
GGAAACGGAAGTCGAAGTGGAGCTCAATGGCAGCCACACCAGCCATAGCA
TAGCCGCTGTGAAGGCGGCTCTGAACGATGCCAAGTCCAAGTTCTTCGGC
ATCAACAACTATGAGTCACCCATGGCCAGTAAGAGTGCAGCAGTGACGAC
GATTGCCAAACCGGAGCCAAGATATCAAAATGTTCCGCAACGCGACGAAC
TGCCGGCAGTGGCTGCTCCCGATCCTCCAGCGCAACCAGCACAGCCGACG
GCTCCAGTTAGCGATCATAGTAGGGCACTGCGCTATGCGACCACCTACGA
ACAGATTCCACTCAGCGACATGGAAGCACCGCAGGCATCGCAGGCCGTCT
ACATGAGCACCACAGTGCCGCAGAACATGAAGGGCATGAAGATCGCCGGA
CGACATACGCCAACTCGCAACAGCCTCAGGCACAGCCGCATGATCGTTGT
CAATCACAAAAACCACGACAGTCTCCAGGCCACCAGGAATCTGAATATAT
CTCGCCAGCTTCTGGTTATGCAATTAGCTGTGGGCCTGTTCATCGTGGGT
CTTGCCGTTTGGATACTAATCCTAGCCCCCAATGCGTCCATATTGATCAA
TCCGTATCTGAGTGGATTGTCGCTGCTATTGGCCAGCATTGCGGGGCTCA
TACTGCTGCGAAGGGATCACAAGATCACGGAGCACAGACCGCAGACCAAT
AGTTGCTACAAGGTCCTGCTGGCCGAGTCGTATGTGTTCACTGGCCTGGC
GTTGATCTTCTGCTGCTTGGCCCTCGTCTGTGCGCAATTGAGTTCGCGGA
GCTCATCTCATCCGCAGACGGAGAATGTGGACCAACATCGAGCTCCATTG
CTTAGCTATCACATTGCACCTGCTTGGCGGCAGGTGAGGTGGTGGCCAAC
TCCTCCTCCGAAGCTTCAATGCCATTTGCAGTTGGTTCAGGAGGAGGCGG
TCCCCAAACGATGGGTTGTGGCCGAGCCTCCGGATCGATGGAAGTATCCG
CTTGCCCCTTCTCCCATGGCCCTCTACACCTTGGAATGGTTTGCCACACA
TTCTCTTAAACATAACGTTATTTTATTGTTGTGCCACGCCAAAGCGGAGA
ACCTTTACCACATCAGCTCACGTGTGTGCAGAAGACCTTCTCTGAGACAC
ACATGC
FMO02707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1806-RB | 1582 | CG1806-RB | 263..1426 | 8..1181 | 5205 | 97 | Plus |
| CG1806-RA | 1648 | CG1806-RA | 329..1492 | 8..1181 | 5205 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12008269..12008705 | 8..444 | 2185 | 100 | Plus |
| X | 23542271 | X | 12009240..12009567 | 722..1049 | 1390 | 97.6 | Plus |
| X | 23542271 | X | 12009023..12009174 | 571..722 | 760 | 100 | Plus |
| X | 23542271 | X | 12008768..12008898 | 442..572 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:04 has no hits.
FMO02707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:39 Download gff for
FMO02707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1806-RA | 323..1368 | 1..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:02 Download gff for
FMO02707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1806-RA | 325..1370 | 1..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:15 Download gff for
FMO02707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1806-RA | 325..1370 | 1..1049 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:15 Download gff for
FMO02707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12009023..12009174 | 571..722 | 100 | -> | Plus |
| X | 12009241..12009567 | 723..1049 | 97 | == | Plus |
| X | 12008265..12008704 | 1..443 | 99 | -> | Plus |
| X | 12008770..12008896 | 444..570 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:02 Download gff for
FMO02707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11902298..11902737 | 1..443 | 99 | -> | Plus |
| arm_X | 11902803..11902929 | 444..570 | 100 | -> | Plus |
| arm_X | 11903056..11903207 | 571..722 | 100 | -> | Plus |
| arm_X | 11903274..11903600 | 723..1049 | 97 | == | Plus |
