FMO02708.5prime Sequence
1190 bp (1001 high quality bases) assembled on 2008-05-23
> FMO02708.5prime
CAGTCGACATGCACACCTTCAGTTTGGTCCTGTTGGCCCTCCTTCCCGTA
GTAACCATAGCTGCCTTGGACAAGCCGGAGCTATCATTTCTAAATGAATT
CTCACAAATTTTCAAGGGAGAACGAGACTTCTCCTTAGCATTAATGAAAC
AGATCCGAGAGATATATCCCAGCGGCAATCTGTTCTTCTCGCCGTTCAGC
ACCTACAACGCCCTGCTCCTCGCCTACTTCAGTTCCTCCGAGCAGACGGA
ACGTGAGCTGGCCCAGGCACTGAACCTGGGATGGGCATTAAACAAACAGC
AGGTCCTAGTTTCGTACACGTTGGCACAGAGGCAGGACGAATTTCGTTGG
CGCCAAAGTCCCATGGAGCTCTCGTCTGCGAACAGAATTTTCGTCGACAG
GACAATAAATGTTTCCAACAAATTCAACACTTTACTCTACGGGGCAACCA
AAGAATTGGATTTCAAGAATGATCCGGAGACTGGCCTAAAGGAAATTAAC
GACTGGATAGCCGATAAGACGCACAACCAGATCCGCGACATGCTCAGCTC
CGAGGAGATCACACCCCACACCATGTTGGTGCTGGCCAACGCCGCCTACA
TGAAGGGCCAGTGGCTCAGCCAGTTCAAGGTGGAGGAGACCGCCTTGAAG
CCATTCTTCATTAACGAGCGTGAGCAGGAAATGGTTTACATGATGCACAA
GACGGGCGCCTTCAAGATGACCATCGATGAGGGCTTGCAATCGCAGATCA
TCAAGCTGCCCTACCGCACCATATACAAGTCGAAGGAGACGCACATTTCC
ACCCCCGAGTCCAAATCCGATATCTCCATGATTATCATTCTGCCGAACTC
AACAAAATCAGTCTTAACCGTGTCATATCCCGGCTAATGCCGATTCCGTT
AGAATGATTCGAACGGGCATTGCCGCAGAGATCGAGTTGTCGCTGCCCAG
TTCCAGTTTGAGCAGCGCCTGCACTGACCCTATCCTCAGCTAATGGGAGT
GAACACATGTCACGAGACCGCCACTTTGGGAGACTGACTGCGATCCATTT
CCTGTCATCGATGACGCCCACATCTGCAGATCAAGTGGACGAGTGGGCAG
GACTGCGCAGCGCACATCTCTTGGTCACGATCGCAGAACCGAATCCTAAT
TCATGCAACACGGTCGGATTCTTATCATGATGCACGGTTG
FMO02708.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn88Eb-RA | 1431 | CG6687-RA | 92..1238 | 9..1127 | 4975 | 97 | Plus |
| Spn88Ea-RB | 1518 | CG18525-RB | 597..748 | 489..640 | 295 | 80.4 | Plus |
| Spn88Ea-RA | 1521 | CG18525-RA | 600..751 | 489..640 | 295 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15207136..15208104 | 971..9 | 4550 | 99.2 | Minus |
| 3R | 32079331 | 3R | 15203899..15204050 | 640..489 | 295 | 79.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:00 has no hits.
FMO02708.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:40 Download gff for
FMO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6687-RA | 81..1197 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:43 Download gff for
FMO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn88Eb-RA | 81..1197 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:56 Download gff for
FMO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn88Eb-RA | 81..1197 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:56 Download gff for
FMO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15207124..15208115 | 1..981 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:43 Download gff for
FMO02708.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11032846..11033837 | 1..981 | 98 | | Minus |
