FMO02715.5prime Sequence
1223 bp (1035 high quality bases) assembled on 2008-05-23
> FMO02715.5prime
CAGTCGACATGTTCAAGTTCGCTTTGACCCTGACGCTCTGCTTGGCGGGC
AGCCTTTCGCTGGCCCAGCACAATCCCCATTGGTGGGGCAATCGCAACAC
CATCGTCCACTTGTTCGAGTGGAAGTGGTCGGACATTGCCCAGGAGTGTG
AGAGTTTTCTCGGACCTCGAGGATTCGCCGGCGTTCAAGTGAGCCCCGTT
AATGAGAACATCTTATCGGCGGGTCGTCCGTGGTGGGAGCGATATCAACC
CATCTCGTACAAGCTGACCACTCGGTCTGGTAATGAGGAGGAATTTGGTG
ACATGGTCCGTCGTTGCAACGATGTGGGTGTTCGTATCTATGTGGATGTG
CTGTTGAACCACATGTCCGGAGATTTTGACGGTGTGGCTGTGGGCACTGC
TGGAACAGAGGCGGAACCCAGTAAGAAATCCTTCCCAGGAGTTCCATACA
CCGCACAGGACTTCCATCCCACCTGCGAGATTACCGACTGGAACGATCGC
TTCCAGGTGCAACAGTGCGAACTGGTTGGCCTCAAGGATCTTGACCAGAG
CAGCGACTGGGTGAGGAGCAAGCTAATTGAGTTCCTGGATCACCTCATCG
AACTGGGTGTTGCTGGCTTCCGGGTGGATGCCGCCAAGCATATGGCATCG
GAAGATCTAGAGTACATCTACAGCAGCCTAAGCAACCTGAACATCGATCA
CGGCTTTCCTCACAACTCCCGTCCCTTCATCTTCCAGGAGGTAATTGATC
ACGGTCACGAAACCGTCTCCCGTGATGAGTACAAGGATCTGGGTGCCGTC
ACCGAGTTCCGATTCTCCGAGGAGATTGGCAACGCCTTCCGTGGCAACAA
CGCACTGAAATGGCTGCAGAGCTGGGGAACCGATTGGGGATTCTTGCCCT
CGGGTCAGCCTTGACCTTTGTGGACACCACGATAACCAGCGAGACGCGGG
TGCCGTGCTGAACTACAAGTCCCCAGCAGTACAAAATGGCAACCGCCTTC
CATTTGGCCTATCCCTACGCATCAGTCGGGTGATGAGCCCATTCCGCCTC
GATGACCACGATACCCGCCCGCCGCAAGGATGGCCAGAAGAAATAATTTC
CACCCGAGTCCAATGCGCATGAACCTGTGTGATGGCTGAATTGCGAGACT
CTGGCTCGATCACGCGATGGGTGCCTCAGACCCGTTCCGAATCGAGATAT
CACGGCGTGGGGGCAAACGTGGG
FMO02715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amyrel-RA | 1549 | CG8221-RA | 2..1148 | 8..1147 | 5245 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16652044..16652698 | 662..8 | 3275 | 100 | Minus |
| 2R | 25286936 | 2R | 16651525..16651989 | 1121..661 | 1780 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:26 has no hits.
FMO02715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:46 Download gff for
FMO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8221-RA | 2..1085 | 8..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:42 Download gff for
FMO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..1085 | 8..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:35 Download gff for
FMO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..1085 | 8..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:35 Download gff for
FMO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16651559..16651987 | 663..1087 | 96 | <- | Minus |
| 2R | 16652044..16652702 | 1..662 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:42 Download gff for
FMO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12539064..12539492 | 663..1087 | 96 | <- | Minus |
| arm_2R | 12539549..12540207 | 1..662 | 99 | | Minus |
