FMO02716.5prime Sequence
1205 bp (1052 high quality bases) assembled on 2008-05-23
> FMO02716.5prime
CAGTCGACATGGATCATCGTGTTTTCCTGTCGCTGATCTTTGTGCTCAGC
GGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAACAGGTAAT
CGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGTGTTCACAC
TGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCAAGGTGATC
CGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGATAGCATCTT
GTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATTGCCCACTT
TGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTTACTTGACT
TACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATCTTTGTGGG
CATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACGGCACTGGC
TGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCAGTCTGGAC
GTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACGGACTACAA
ATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAATTCTGCACG
GACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGAATGTTGCT
CCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGCATCACCTC
GATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCCATTTAGCT
GTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTGCGGCTCTG
CAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACCATCTCATG
TGCCATGTACAACTTCATTGGACTGTACATTGCGATGTACTCGTCCAGCG
CCAACCGGCTTCTGGCCGATGGCCTACGCGTTTACTTCATCTGGGTGTTT
GTGATTATCATGGAGTGGGAGTACATGATCTGGTCACGATCATGGGCTTC
CTCATCCTGCAAATGGGTATCATCCTCTACGGACAGGCCCTATTCCTCGA
CTGGATCGAGCTGCATGGCCCGCTGGTATCCTCCTCGTTACTGGATTGGG
TACTGAGAATGCGGTGTTCGAACGCCGGCACGATGTATTCAGCTTCCAAC
ATTCTTGGCCGGTCCAGTAATGGCTATCTAAACTAATCTAAATCTAATAC
ACACT
FMO02716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango9-RB | 3673 | CG10007-RB | 298..1408 | 9..1114 | 5385 | 99.3 | Plus |
| Tango9-RA | 1590 | CG10007-RA | 298..1408 | 9..1114 | 5385 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11973272..11974014 | 1114..377 | 3420 | 98.9 | Minus |
| 3R | 32079331 | 3R | 11974073..11974227 | 379..225 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 11974308..11974457 | 226..77 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 11974543..11974613 | 79..9 | 355 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1256..1294 | 815..853 | 114 | 76.9 | Plus |
FMO02716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:48 Download gff for
FMO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10007-RA | 246..1381 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:03 Download gff for
FMO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango9-RA | 291..1426 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:50 Download gff for
FMO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango9-RA | 291..1426 | 1..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:50 Download gff for
FMO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11974310..11974457 | 77..224 | 100 | <- | Minus |
| 3R | 11974546..11974619 | 1..76 | 96 | | Minus |
| 3R | 11973254..11974012 | 379..1129 | 98 | <- | Minus |
| 3R | 11974074..11974227 | 225..378 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:03 Download gff for
FMO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7798976..7799734 | 379..1129 | 98 | <- | Minus |
| arm_3R | 7799796..7799949 | 225..378 | 100 | <- | Minus |
| arm_3R | 7800032..7800179 | 77..224 | 100 | <- | Minus |
| arm_3R | 7800268..7800341 | 1..76 | 96 | | Minus |
