FMO02718.5prime Sequence
1219 bp (1039 high quality bases) assembled on 2008-05-23
> FMO02718.5prime
AAATACCAAGTTATCAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCG
GAAATGCGAATACCGGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCC
AGTTCTCCGGTTCAGAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCT
GGAGGCACCGGCTCCATGTCCACTGCGCTGCCAACGAACACTTCCCCTTC
CGCCGGCGAAAAGCACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGC
AGGCTATACGGCTCCGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGA
GCAGCTGCTGGCCAATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCC
CCCAATCCGATGGCTACTACACGCTGAGCCTGCGCTTCAACAAGCGACCC
AAGCACTACAAGCTGCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGG
CCAGGACAAGCGCTTCGACACGGTGCACGACATGGTCGCCGACGGGCTGA
TCAACTTTCACATGCAGCTCCACGCCAGTCCCATCATCCAGCAGATTAAT
CAACAGACCAAGAACTGCTACCAGCAAAGCCCATACATGACTTTAAATGG
CCGGAAACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGG
AATCGAAGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCA
CCGCCTCCAGCCGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCA
CTTCAAGGTGCACACGTTTAAAGGGCTCAACTGGTGCGAGTTCTGCGCCA
ACTTCTTGTGGGGATTCACCGCCCAGGGCGTCAAGTGTGAGGCGTGCGGC
TTTGTGGCGCACAGCAAGTGCTCCGAACTGGTGCCGCCCAAGTGTGTGCC
GGATCTGAAGCGCATACGCGGCGTATTTGGCACGGATCTGACACGATGGT
GCAGCTGGAGCCCACCACCAGATACCTTCGTGGTGCGCCGCTGGTGGAGG
AGGTGGAGGCCCGGGGCATGCTGCAGAGGTATCTATCGGGTTCCGGCTTG
GCGATGAGATCGAGGCACTCAGCTCGCCTTGATCGCAGGGCAGAAAACGG
ACTTTCGGAAACCGGCTATGGCATGTGCTGTGAATCCGCACCTGAACTCT
ACTGCCTATGTGCGTGCGCTCTATCAATCAAGGCTATCAGTTTATAGGCA
ACCGAGAACCACACGCGAC
FMO02718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP5A-RA | 1933 | CG3208-RA | 130..1243 | 23..1123 | 4975 | 97.3 | Plus |
| RhoGAP5A-RB | 1905 | CG3208-RB | 130..1243 | 23..1123 | 4975 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5617855..5618480 | 760..135 | 3025 | 98.9 | Minus |
| X | 23542271 | X | 5617465..5617788 | 1071..756 | 1195 | 96.3 | Minus |
| X | 23542271 | X | 5618566..5618677 | 134..23 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:11 has no hits.
FMO02718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:50 Download gff for
FMO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3208-RA | 118..1204 | 16..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:49 Download gff for
FMO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 123..1209 | 16..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:01 Download gff for
FMO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 123..1209 | 16..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:01 Download gff for
FMO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5617465..5617786 | 758..1071 | 96 | <- | Minus |
| X | 5617858..5618480 | 135..757 | 98 | <- | Minus |
| X | 5618566..5618680 | 16..134 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:49 Download gff for
FMO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5511498..5511819 | 758..1071 | 96 | <- | Minus |
| arm_X | 5511891..5512513 | 135..757 | 98 | <- | Minus |
| arm_X | 5512599..5512713 | 16..134 | 96 | | Minus |
