FMO02721.5prime Sequence
1217 bp (1018 high quality bases) assembled on 2008-05-23
> FMO02721.5prime
AAATACCAAGTTATCAGTCGACATGCGTCCGTTCTCCGGCAGCGATTGCC
TTAAGCCCGTCACCGAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCT
TGGCAGGTCGCCACCATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCT
CTGGACTGTGATCTGCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTC
AGTTCTTTAAGTTTGCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAG
ACTGAATTGGCCAAGGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAG
CAACGCCCACCTTACCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCA
AGGAGGAGATCCTCCGACTGGTGGATGAGCACCTGAAGACTGGTCACTAC
AACTGGCGTGATGGTCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGA
TCTGGTGGAGCTCGTCACTGAAGTGTACGGCAAGGCCTCCTACACCAATC
CCTTGCACGCAGATCTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTA
GTGCGCATGGCATGCAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAAC
CATGACCACCGGCGGCACCGAATCCATTGTAATGGCCATGAAGGCGTACA
GGGATTTCGCTAGAGAGTACAAGGGAATCACCAGGCCAAACATCGTGGTG
CCTAAGACGGTCCACGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATAT
CCACGTGCGATCCGTGGATGTAGATCCGGAGACCTACGAAGTGGACATTA
AGAAGTTTCAAACGTGCCATTAATAGGAACACGATTCTGCTGGTTGGGTC
TGCTCCAAACTTCCCCTATAGGAACCATAGATGATATCGAAGCTATCGCC
GCTTTGGGCGTTAAGTACGACATTCCCGTGCACGTGGACGCCTGCCTGGC
AGCTTTGTGTGGCTTGGTCCGCACGCTGCTATAGCTGCGTCCCTTCGACT
TTGAAGTCAAGGAGTGACCAGTATCTCGCTGATACCCAAAGTATGGTTTC
CCGCCAGGATCATCGGTGATCCATTACTCCGAACAAAAGTTAAGAACTCA
GTCCCTGTGAACTACTGACTGCTGGCGCGTTATGATTTCAAGTCAACGGT
CGGCGGAGTATTCACGCGTCAGGACATGATATGACCTTTGGCTTGTGAAG
TGGTATATCTGAGGAGC
FMO02721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 161..1272 | 23..1121 | 4850 | 96.8 | Plus |
| Sply-RB | 2014 | CG8946-RB | 98..1209 | 23..1121 | 4850 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089714..17090375 | 839..177 | 3235 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17091359..17091512 | 176..23 | 740 | 98.7 | Minus |
| 2R | 25286936 | 2R | 17089408..17089659 | 1079..839 | 575 | 90.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:30 has no hits.
FMO02721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:55 Download gff for
FMO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8946-RA | 154..1237 | 15..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:07 Download gff for
FMO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1175 | 15..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:14 Download gff for
FMO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1175 | 15..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:14 Download gff for
FMO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17089397..17089658 | 840..1090 | 91 | <- | Minus |
| 2R | 17089714..17090375 | 177..839 | 99 | <- | Minus |
| 2R | 17091359..17091516 | 15..176 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:07 Download gff for
FMO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12976902..12977163 | 840..1090 | 91 | <- | Minus |
| arm_2R | 12977219..12977880 | 177..839 | 99 | <- | Minus |
| arm_2R | 12978864..12979021 | 15..176 | 96 | | Minus |
