FMO02723.5prime Sequence
818 bp (818 high quality bases) assembled on 2008-05-23
> FMO02723.5prime
CAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCCATTGCAGC
GCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCGGGGACAAC
TTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTGTGGCAGTC
GCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGCGTTCCTCC
TCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGTTCATCACG
CGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGCAAGCCGCT
GCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACAAGGTACGC
GAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATGGTGATTGA
CGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTTTGAGAAAC
TCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAGAAGTGGAT
GGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCTCATACCCC
AACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGCTCCACGCT
CATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCTCCGCTTCG
CCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGATCGCTACGA
CCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCGCAACAAGG
AGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGACTTCATCGCGCTAT
GCAAGCTTTCTAGACCAT
FMO02723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tra2-RF | 1381 | CG10128-RF | 171..962 | 9..800 | 3840 | 99.1 | Plus |
| tra2-RA | 1376 | CG10128-RA | 166..957 | 9..800 | 3840 | 99.1 | Plus |
| tra2-RG | 1391 | CG10128-RG | 181..972 | 9..800 | 3840 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14602502..14602880 | 783..404 | 1805 | 98.9 | Minus |
| 2R | 25286936 | 2R | 14603347..14603503 | 279..123 | 770 | 99.4 | Minus |
| 2R | 25286936 | 2R | 14603161..14603289 | 407..279 | 615 | 98.4 | Minus |
| 2R | 25286936 | 2R | 14603982..14604099 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:22 has no hits.
FMO02723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:42 Download gff for
FMO02723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10128-RA | 175..982 | 1..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:03 Download gff for
FMO02723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tra2-RG | 175..982 | 1..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:10 Download gff for
FMO02723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tra2-RG | 175..982 | 1..811 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:10 Download gff for
FMO02723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14602504..14602876 | 408..781 | 99 | <- | Minus |
| 2R | 14603161..14603289 | 279..407 | 98 | <- | Minus |
| 2R | 14603348..14603501 | 125..278 | 99 | <- | Minus |
| 2R | 14603984..14604104 | 1..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:03 Download gff for
FMO02723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10490009..10490381 | 408..781 | 99 | <- | Minus |
| arm_2R | 10490666..10490794 | 279..407 | 98 | <- | Minus |
| arm_2R | 10490853..10491006 | 125..278 | 99 | <- | Minus |
| arm_2R | 10491489..10491609 | 1..124 | 96 | | Minus |
