FMO02727.5prime Sequence
1220 bp (1042 high quality bases) assembled on 2008-05-23
> FMO02727.5prime
CAGTCGACATGCGATTTATGCTGCTCATGCTGCAGCTGCTCGGCCTGCTG
CTCCTCCTCGCCGGCGGAGTGCAGTCCGTCTACTGTCCGGCTGGATGCAC
CTGCTTGGAGCGAACCGTGCGCTGCATCCGCGCCAAGCTGTCCGCCGTGC
CGAAACTGCCCCAGGATACACAAACGCTAGATTTGCGTTTCAATCACATC
GAGGAGCTGCCGGCCAACGCGTTCAGTGGTCTCGCCCAGCTGACTACGCT
TTTTCTGAACGACAACGAGCTGGCTTACCTGCAGGATGGGGCTCTCAATG
GACTGACGGCGCTGAGGTTCGTCTATCTGAACAATAATCGGCTAAGCCGC
TTACCGGCGACCATCTTCCAGCGGATGCCGCGCCTGGAGGCGATTTTCCT
GGAAAACAATGACATTTGGCAGCTGCCCGCCGGGCTCTTTGACAACTTGC
CGCGTCTGAATCGCCTGATCATGTACAACAACAAGCTGACCCAACTGCCT
GTGGACGGATTCAATCGACTGAACAACCTGAAGCGCCTGCGACTGGACGG
CAACGCCATCGATTGCAATTGTGGCGTCTACTCGCTCTGGCGTCGCTGGC
ACCTGGATGTGCAGCGCCAGTTGGTGTCCATTTCGCTCACCTGTGCCGCT
CCCCAGATGCTCCAAAACCAGGGCTTTTCCAGCCTGGGCGAGCATCACTT
CAAATGCGCCAAGCCGCAGTTCCTGGTGGCACCACAAGATGCCCAAGTCG
CTGCCGGGGAGCATGTGGAGCTGAGCTGCGAGGTCACCGGCCTGCCCCGC
CCCCAGATCACGTGGATGCACAACACGCAGGAGTTGGGCTTGGAGGAGCA
GGCACAGGCGGAGATCCTGCTCAGCGGCAGTCTGCTCATCCGCAGCGCGG
ACCCAGCGACATGGGCATCTACCAGTGCATCGCTCGCACGAGATGGGCGC
ACTGCGTTCCCAACCCGTTCGCCTGTAGTTAATGGCGGTAACCACCCACT
CGATTCGCCCATCGACGCCCGCAGCAATCAGGTGTTGGCGGGATGCCGAA
CACCCATGCACGGAGCAACGCCCACTGCCATCGCATGCATCGCCACCGCA
CTTTACCCCAACCCACGACAATGTTGACCTTCCAGTCTTGGAACGTCTGT
CAATGGCGCTTCCGCTGACAGCGACAAATCAATGGGTTCTGACATAGTGC
CGCACACATCATGTTGTCAG
FMO02727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RB | 2492 | CG12002-RB | 363..1472 | 4..1108 | 5275 | 98.8 | Plus |
| Pxn-RE | 4820 | CG12002-RE | 57..1166 | 4..1108 | 5275 | 98.8 | Plus |
| Pxn-RD | 5196 | CG12002-RD | 433..1542 | 4..1108 | 5275 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2610755..2611160 | 1108..708 | 1590 | 95.6 | Minus |
| 3L | 28110227 | 3L | 2611316..2611557 | 708..467 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 2611788..2612003 | 394..179 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 2629141..2629315 | 178..4 | 860 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2611638..2611710 | 467..395 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:14 has no hits.
FMO02727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:39 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:24 Download gff for
FMO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RD | 438..1564 | 1..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:38 Download gff for
FMO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RD | 430..1556 | 1..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:38 Download gff for
FMO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2610741..2611159 | 709..1119 | 96 | <- | Minus |
| 3L | 2611316..2611557 | 467..708 | 100 | <- | Minus |
| 3L | 2611639..2611710 | 395..466 | 100 | <- | Minus |
| 3L | 2611788..2612003 | 179..394 | 100 | <- | Minus |
| 3L | 2629141..2629316 | 1..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:24 Download gff for
FMO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2629141..2629316 | 1..178 | 98 | | Minus |
| arm_3L | 2611788..2612003 | 179..394 | 100 | <- | Minus |
| arm_3L | 2610741..2611159 | 709..1119 | 96 | <- | Minus |
| arm_3L | 2611316..2611557 | 467..708 | 100 | <- | Minus |
| arm_3L | 2611639..2611710 | 395..466 | 100 | <- | Minus |
