FMO02729.5prime Sequence
1037 bp (954 high quality bases) assembled on 2008-05-23
> FMO02729.5prime
AAAATACAAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCCGGAGGCG
CCCAAGAAGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCT
CTCCGGAATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGA
CCCGCATGCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGC
TCCTTGCACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCT
TTACCAGGGCATCGGAGCTGCTCTGCTGAAACAGGCAACCTACACCACGG
GAAGATTGGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTC
CAGAGGAGTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGG
AGCATGTGGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCA
TGACTTCCGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAAT
GTGGCCAACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCT
GTGGAGAGGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGA
CCCAACTGGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCC
CTTCAGATGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAG
CGGTCTACTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCC
GTATCCAGAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACC
GCCGACGTCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTG
GAAGGGATTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGA
CCTTCATATTCTGGAGCAGCTTAACCAGGCTACACAGTACGTCCTGACTC
GATCAGAGCACTGGCCTGCAAGCTTTCTAGACCATCGTTGGCGCGCGGGC
CCAGGTAGTTGTCATAATCATATCATATCATAATCAT
FMO02729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1907-RA | 1623 | CG1907-RA | 467..1417 | 24..968 | 4380 | 97.8 | Plus |
| CG18418-RA | 1142 | CG18418-RA | 745..828 | 708..791 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29619721..29620508 | 143..929 | 3725 | 98.5 | Plus |
| 3R | 32079331 | 3R | 29619531..29619652 | 24..145 | 580 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:20 has no hits.
FMO02729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:05 Download gff for
FMO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1907-RA | 495..1451 | 21..971 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:51 Download gff for
FMO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1907-RA | 464..1420 | 21..971 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:45 Download gff for
FMO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1907-RA | 464..1420 | 21..971 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:45 Download gff for
FMO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29619528..29619650 | 21..143 | 97 | -> | Plus |
| 3R | 29619722..29620555 | 144..971 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:51 Download gff for
FMO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25445250..25445372 | 21..143 | 97 | -> | Plus |
| arm_3R | 25445444..25446277 | 144..971 | 97 | | Plus |
