FMO02731.5prime Sequence
1229 bp (1054 high quality bases) assembled on 2008-05-23
> FMO02731.5prime
CAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCACCCACTCG
CTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGACATGAAGCC
CAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCCCTCTCAGA
AGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGAAGCTCATC
CAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTCCCGAATTT
CAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACATAGGCCGCG
AGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGTCCTTGAGG
GAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGCAATGGCTT
CAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCGCGATGTCA
TCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCCTGACAACC
TATGGCCATATTAACAATAACAACAACAACAACAACAACAGTAACAGCTT
GGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTCCTTTAACG
AGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCAATGTAAGC
GACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTGGATCTCTC
GGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTCCGGCGGCG
GGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTCGGGTGAGC
TCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAAGACATGGA
CGACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGCATCCGACG
TAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATCCTCTGATT
CTGGATTCCAACTCACGCGGTAGCCCAATGTTGGTGTGGACGATGGTGTC
ATGTCCCGCAAGCTTCGCCGTAACGTCGATCAGATGTTTGGGAGAAGAAA
CGGTCACGCCATGCGGTATTCAATGGGTGACGAACTACAAAAACAATGCT
TGCAACAGCACCGTCATCTTCCGGCAGCAACAGGGCCGTCCCAGCGGAAG
GGTGGATCTGCCGCCCTAAACTGTACCGTGAAGTGTGAACTCCCAAGATC
TGGTGCGCTTATATCTACCCACACAGCTT
FMO02731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes2-RB | 2302 | CG11100-RB | 131..1329 | 9..1202 | 5335 | 97.1 | Plus |
| Mes2-RC | 2208 | CG11100-RC | 191..1235 | 163..1202 | 4565 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22950532..22951237 | 464..1166 | 2835 | 95.3 | Plus |
| 3L | 28110227 | 3L | 22946270..22946571 | 163..464 | 1510 | 100 | Plus |
| 3L | 28110227 | 3L | 22945787..22945940 | 9..162 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:35 has no hits.
FMO02731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:06 Download gff for
FMO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11100-RB | 122..1302 | 1..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:48 Download gff for
FMO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 124..1304 | 1..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:40 Download gff for
FMO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 124..1304 | 1..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:40 Download gff for
FMO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22945780..22945940 | 1..162 | 97 | -> | Plus |
| 3L | 22946270..22946570 | 163..463 | 100 | -> | Plus |
| 3L | 22950532..22951250 | 464..1176 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:48 Download gff for
FMO02731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22938880..22939040 | 1..162 | 97 | -> | Plus |
| arm_3L | 22939370..22939670 | 163..463 | 100 | -> | Plus |
| arm_3L | 22943632..22944350 | 464..1176 | 96 | | Plus |
