FMO02733.5prime Sequence
1246 bp (868 high quality bases) assembled on 2008-05-23
> FMO02733.5prime
CAATCCACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCCAGCTGATG
GATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGCTCCTGGAT
AGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCTGTCGGGAC
CCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCTCTGTGATT
CCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGCATCAAGGT
GGTGATCTTTGCACGCTTCCTGTGCGGATTCCCCACCGGAATTCTGGGTG
GACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATCTGCGGAGT
CTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATCCTAATGGT
CTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTGGTGCGCCA
ACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATACCGGAGACT
CCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTGCAGGCCCT
CTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCTGAATGATA
TGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGAACGAGAAC
ATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTGGTCATTGT
GATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCATCGTGATCT
TCTATGCCGTGTACATGATCTCGGAGTTCGGAGCGGAGTTCGACTCCAAG
CATGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGCATGGTCTT
CTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAAGATCATGATAGTGTCGG
GAATCGGCTCCGGCTTGTTCTGCCTGGTGCTCAGTGTCTATCAGTATGCC
AAATTCAATCAACCGAAAATGTCATACGACGTATTCGTGGTGCCTGCTGT
CTTCTGGGCTACATCATCTTCAACTTGTACTGATGAGTGAAGCCCGGGCA
TTATGATACGCGAGTCTTTCCCCGCAAGAATAACGAACGGACGCGCTGAA
ACGATTTGCCTCAGGAAGTCGCCTCGTCACCTTCCGAAAAGTTTCTCTTT
GTGACGCGAGCCAGCCTAATGGCGCGCGGTATCAGAATTACGAAGGATCA
GATCTGCGGTCCAAGTGTCCGTGGTGAGCCATTCATAAGACTGTCG
FMO02733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 482..1538 | 8..1064 | 4835 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812792..23813507 | 1024..310 | 3365 | 98.3 | Minus |
| 2R | 25286936 | 2R | 23814322..23814535 | 314..101 | 980 | 97.2 | Minus |
| 2R | 25286936 | 2R | 23814596..23814690 | 102..8 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:46 has no hits.
FMO02733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:09 Download gff for
FMO02733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RA | 321..1344 | 8..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:54 Download gff for
FMO02733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 482..1505 | 8..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:45 Download gff for
FMO02733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 482..1505 | 8..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:45 Download gff for
FMO02733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23812792..23813505 | 312..1024 | 98 | <- | Minus |
| 2R | 23814325..23814533 | 103..311 | 97 | <- | Minus |
| 2R | 23814596..23814690 | 8..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:54 Download gff for
FMO02733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19700315..19701028 | 312..1024 | 98 | <- | Minus |
| arm_2R | 19701848..19702056 | 103..311 | 97 | <- | Minus |
| arm_2R | 19702119..19702213 | 8..102 | 100 | | Minus |
