FMO02734.5prime Sequence
1234 bp (1047 high quality bases) assembled on 2008-05-23
> FMO02734.5prime
CAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGGCCGCCATC
TGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTACATCATGGC
TGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTCGGTGGCCG
CCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTCCGTACCGC
ATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGTGGATCTCT
GCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGACCATTGGGA
TTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCTTCTTTGTG
CCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAATGCGATAAC
TGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTATAACCGCCT
GTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGAACTTCATG
AACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCCACACCGGC
AACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTACGTGGAGC
GGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAG
GCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGACATGATCAG
CACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCATCTGGCTGG
TTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAGTGATGACA
GTGATGTACCTATTCGTGCGCGAGAAATTCCACTGGACTGTGCGGGACTA
CACATTCTTTGAAACGGTCAGCCACCTGGTGCCCATGATTGGCGCACTCA
TTGGTTTCCTTATTCTGCGGAAGGTCTTTCGCTGTCGGTGGTGACCCTGG
CACTGCTTGCGTTCTTTTCGGAGATTCTGAATAATCTGGCCAAGGGCTTT
GCAACGATGCCCTGGCAATGTACTTTCCGGTGACTTGGGCGTCTTCCGCT
CATCTCAAGCCCATGTGCCGCACAATAGATCGACATATGCCTCCTCGGAT
CTGGAAAGAATTTTCCATCAGAATGTTTTGGCAGACATCGACACGGTTCG
ACTGCACTGTAACCTACATATAAGCGAATCCTGACCACCATTCGGGCTCG
CTGTATACACTTCTTAGCACCCTAGCGAGCTCGT
FMO02734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 2680 | CG8008-RB | 655..1789 | 8..1130 | 5240 | 98.1 | Plus |
| CG8008-RA | 2748 | CG8008-RA | 723..1857 | 8..1130 | 5240 | 98.1 | Plus |
| CG15553-RC | 1784 | CG15553-RC | 511..668 | 58..215 | 265 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9159533..9160305 | 786..14 | 3835 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9159334..9159473 | 925..786 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 9159108..9159269 | 1078..922 | 485 | 93.8 | Minus |
| 3R | 32079331 | 3R | 31100366..31100486 | 178..58 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:28 has no hits.
FMO02734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:56 Download gff for
FMO02734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RB | 652..1788 | 4..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:32 Download gff for
FMO02734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1857 | 4..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:24 Download gff for
FMO02734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1857 | 4..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:24 Download gff for
FMO02734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9159336..9159472 | 787..923 | 100 | <- | Minus |
| 2R | 9159533..9160305 | 14..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:32 Download gff for
FMO02734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5046841..5046977 | 787..923 | 100 | <- | Minus |
| arm_2R | 5047038..5047810 | 14..786 | 99 | | Minus |
