FMO02736.5prime Sequence
1238 bp (1001 high quality bases) assembled on 2008-05-23
> FMO02736.5prime
AAAATACCAAGTTATCAGTCGACATGCTCTGCCGACTGGCGGGAAACAGG
AGTTTGGGTGCACGATATACCGCCTCCATCAAGGCTATTGCGTGCTACTC
CACGTCGGGAAAACAGCGGAACGGCAAGATCTACGAGTCGGCCATAGATG
CTGTGGCCGATGTGCAGGATGGTGCCCAGATCCTGTTCGGCGGATTCGGA
ATCTGCGGCATTCCGGAGAAGATGATCAACGCGCTCAAGCAGAAAGGAGT
CAAGAACATCACTGGCGTTTCCAACAATGGAGGTGTGGACGACACTGGTC
TGGGTGTCCTGATCAAGCAGAAGCAGGTGTCCAAGGTAATTGGCTCCTAT
GTCGGCGAAAACACGGAGTTGGTGCGTCAATATCTGGAAGGAGAACTGGC
CGTGGAACTGACTCCCCAAGGCACCCTAGCGGAAAAGATCCGCGCTGGAG
GAGCCGGCATTCCGGCCTTCTACACGCCCACTGGCTACGCCACTCTTGTC
CAGGAAGGCGGAGCACCCATTAAGTACTCCAAGGATGGCAAAGTGGAAAT
ATCCAGCGAAAAGAAGCCCGTGAAGGAGTTCAACGGAAAGAACTACGTGA
TGGAGGAGTCCATCTTCGCAGACTTTGCCTTTGTCAAGGCCCAGAAGGCC
GATCCCTTGGGCAATCTGGTGTTCAACAAAGCTGCCAGAAACTTCAATGC
ACCCATGTGCAGGGCTGCCAAAATCACCGTGGCCGAATGGAGGAAATCGT
GCCCATCGGAGCCCTTTCTCCCGATGAGATCCATGTGCCCGGCATCTACA
TTAACCGCATCTTCAAGGGCACCACTACAACAAGCGTGTGGAACGCTTGC
GCATCACGGAACCCAAGGATCCCCAGCAACCCGCTCCTCCACCAAATCCC
GCCCAGGTTTTACGTGAGCGCATTGCCCGTCGAGTGCTCTTGAGTTCCAC
GACGGCATGTATGCCAATCTGGGCATTGGCATTCCCGTGCTCCTCCTCCA
ACTACATCCCAAAGGTCATGAACGTGGATGCCTGCAGTCCGGAGAACGGA
ATTCTGGGGCCTGGGGACCCTTTCCCCACCAAAGGAAAAAAGGGGAATCC
GAACTTGAATCAAGCCCGAAAGAAAGGGTTACGCTGGCGCCGGAACCTCT
ACGTTGGATCCAATAACCCTTGCCATGACCTCGGTGGGGGTCCATGTCGT
AATACATCCAATTCTGGGCCGCCATTAGTGAAAGTGGG
FMO02736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCOT-RA | 1768 | CG1140-RA | 92..1244 | 24..1178 | 5000 | 96.5 | Plus |
| SCOT-RC | 2006 | CG1140-RC | 388..1482 | 82..1178 | 4725 | 96.4 | Plus |
| SCOT-RB | 1966 | CG1140-RB | 349..1442 | 83..1178 | 4720 | 96.4 | Plus |
| SCOT-RC | 2006 | CG1140-RC | 92..151 | 24..83 | 285 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1965328..1966075 | 281..1026 | 3455 | 98.7 | Plus |
| 3L | 28110227 | 3L | 1965073..1965275 | 82..284 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 1964550..1964610 | 24..84 | 290 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:36 has no hits.
FMO02736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:48:59 Download gff for
FMO02736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1140-RA | 71..1151 | 12..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:37 Download gff for
FMO02736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1140-RA | 82..1162 | 12..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:26 Download gff for
FMO02736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCOT-RA | 82..1162 | 12..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:26 Download gff for
FMO02736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1965075..1965273 | 84..282 | 100 | -> | Plus |
| 3L | 1964540..1964609 | 12..83 | 91 | -> | Plus |
| 3L | 1965330..1966141 | 283..1101 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:37 Download gff for
FMO02736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1964540..1964609 | 12..83 | 91 | -> | Plus |
| arm_3L | 1965075..1965273 | 84..282 | 100 | -> | Plus |
| arm_3L | 1965330..1966141 | 283..1101 | 97 | | Plus |
