FMO02738.5prime Sequence
1246 bp (1021 high quality bases) assembled on 2008-05-23
> FMO02738.5prime
AAAAAACAAAGTTATCAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCC
TTTGCCCGGGCCAACTATAGCACCAAAAAGGAACTGGTGACTCGCTACAG
CGGCGATTTCCCCGAGAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTC
ACATGTACATTGCAAATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTG
GAGCCCCATTTCCAGAGCTCCGGTTGCGATACCGTGATGGAACTCAATTC
CGGTGCTGGGTACTTTACCCGGCATCTGTTGGACAGGGAATCCCAGTTTC
GACGCATAATTCTGCTTGAGAGCATGGATCACTTTATGCCCAAAATCCAG
GAGCTACACACGCTATATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTT
TGTGAACCTGTGGAAGTTGGTGTACATGGACAAAATGGACGGTGGTTCCA
GGGTGGCGGATCTCCTGAGTGATGTGCCCCAGAAAGCGTTTACAGATGAT
ATCAACATGCTAGTCTTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCA
CTTGATCAACTCCCTCATTTTTCAGACCAGCCTTTTCAACCTTGGACGCT
GTGAGATGATCCTCGCCATGCCGCCACCCATATACATACATCTCACCTGC
AACAACGAGATTGGCTACCTCATTTACCGATCGACCAGCGTACTGTTTCA
ATTCTGTTTGAGCACAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCT
ACCTCAGCAGATGGCCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAAG
TGCAGTCCATCAATCCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGC
CGCAATCTTCATGAGCTGTGCCAGTCGCAGGATCTACCCGCTCTCTGGTT
CTTCATTAAGCAGAACTATGTAAGCCGACGAAACAGAATAATACTCAATT
TAGAAAGTGGGTTCCCTGCTGTGGACCTCGGCTTATCATTAATCCGAAGT
CCTCCGAGTCGTAACACCCATCTATCCAGATGATTGCCCAGTATTTACAC
AGGTCTCGTGCCAGAGTACTACATGACACTGAAACTACTATGCCAGCATC
AACTCCTACACATTTCCGAGATCTCCTTGCCCCAGTCGAATCGACGCTAT
TTAGTCAGTTCTGCTATGGCCGAACTCGCAATCTTCCCGCTCATGTACTG
CCGTCCTCACCGTGGAACCGTCCAGTGCAGCACAACTCCAAACGTA
FMO02738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB2-RA | 1512 | CG3910-RA | 96..1243 | 24..1160 | 5145 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10045669..10046143 | 24..498 | 2375 | 100 | Plus |
| 3R | 32079331 | 3R | 10046398..10046714 | 639..954 | 1505 | 99.1 | Plus |
| 3R | 32079331 | 3R | 10046196..10046336 | 498..638 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 10046773..10046856 | 951..1033 | 355 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:25:37 has no hits.
FMO02738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:16 Download gff for
FMO02738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3910-RA | 91..1149 | 21..1073 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:10 Download gff for
FMO02738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB2-RA | 93..1151 | 21..1073 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:19 Download gff for
FMO02738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB2-RA | 93..1151 | 21..1073 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:19 Download gff for
FMO02738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10046398..10046718 | 639..957 | 98 | -> | Plus |
| 3R | 10046780..10046899 | 958..1073 | 91 | == | Plus |
| 3R | 10045653..10046143 | 11..498 | 98 | -> | Plus |
| 3R | 10046197..10046336 | 499..638 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:10 Download gff for
FMO02738.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5871375..5871865 | 11..498 | 98 | -> | Plus |
| arm_3R | 5871919..5872058 | 499..638 | 100 | -> | Plus |
| arm_3R | 5872120..5872440 | 639..957 | 98 | -> | Plus |
| arm_3R | 5872502..5872621 | 958..1073 | 91 | == | Plus |
