FMO02742.5prime Sequence
1071 bp (1045 high quality bases) assembled on 2008-05-23
> FMO02742.5prime
AAAACAAAGTTATCAGTCGACATGGGAAAGCTGCTGAGCCTGCTGTCACG
CGACGACTCCAATTGTTGCGCCGCCAAATCCTACGATGTCTTCCTGGATT
TCGAGAACGCCGCGCCCACGGAAACGGAGCGTGCCGTCTACGACGAGGTG
GAGCGGGTACTCCGGGAATCGGAGGTGGTGCTCGACGAGATACAGATCTA
TCGGGGTGCCGGCAAGGAAATCCGAGAAGCCATCGCCGATCCATCGCCGG
AGGTGACCGCCAAAGCCTGGGCGGCGGTGCTGCCGTTGGTGAACAAGCTG
AAGCGCTGCTACGAGCATTCCATGGAGCTGGACAAGATTGTGCCCAAGCT
GCTGGGCCAGCTGGTGGGCGGAAAACTGAATCCGACACAGCATCTGGAGA
CGCAGCAGGCGCTGGTCAAGCAGCTGGCCGAGATCTTGGAGTTCGTGCTG
AAGTTCGATGAGTACAAGATGAAAACCCCCGCCATACAGAATGATTTTAG
CTACTACAGACGCATCGTCAGCCGACAGCGTGTGGATTCCACGGAGAATA
TGCTGGTCAGCACGGAACTGGCCAACCGGATGTCCCTGTTCTACGCCCAC
GCCACGCCCATGCTCAAGGTGCTGAGCGAGGCGACCTCAAAGTTTGTCAA
TGACAATGCCGATGATGTCCAGAACACGACGGAAACGCTGGGCACCATGG
CCAAGGTGTGCCTGAGGATGCTGGAAAATCCAAAACTCCTGCAACAGATC
GAGCGTGAGGACACGAAAATGCTGGTGCTGCGCGTAATGGTCGGCCTGGT
GATCCTCTACGACCATGTGCATCCGGAGGGAGCCTTCGTGCGTGGCGCCC
ATGTGGATGTGAAGGGGTGCGTCCGACTGCTGCAGGCGCAACCGGCCATC
AGGCGGAGCCGCTGCTGATGCCCTGCGATACACGACGAAGCATTTGATGG
GGAGACACGCCGAAGAATATACAGCGTTTGTTGGCCGCAGCAAGCTTTCA
AGACCATTCGTTTGGCGCCGCGGGCCCAGGTAGTGTCATATTCATATCAT
ATCATATCATAATCCCACTAG
FMO02742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32066-RB | 2324 | CG32066-RB | 435..1406 | 22..989 | 4760 | 99.6 | Plus |
| CG32066-RC | 2112 | CG32066-RC | 353..1324 | 22..989 | 4760 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10646859..10647127 | 472..204 | 1330 | 99.6 | Minus |
| 3L | 28110227 | 3L | 10641532..10641796 | 731..467 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 10641204..10641465 | 989..732 | 1110 | 98.5 | Minus |
| 3L | 28110227 | 3L | 10659364..10659547 | 205..22 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:22 has no hits.
FMO02742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:41 Download gff for
FMO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RC | 348..1331 | 15..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:09 Download gff for
FMO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RC | 348..1331 | 15..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:27 Download gff for
FMO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RC | 348..1331 | 15..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:27 Download gff for
FMO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10641204..10641465 | 732..989 | 98 | <- | Minus |
| 3L | 10641532..10641794 | 469..731 | 100 | <- | Minus |
| 3L | 10646863..10647126 | 205..468 | 100 | <- | Minus |
| 3L | 10659365..10659552 | 15..204 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:09 Download gff for
FMO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10639963..10640226 | 205..468 | 100 | <- | Minus |
| arm_3L | 10634632..10634894 | 469..731 | 100 | <- | Minus |
| arm_3L | 10652465..10652652 | 15..204 | 97 | | Minus |
| arm_3L | 10634304..10634565 | 732..989 | 98 | <- | Minus |
