FMO02744.5prime Sequence
1223 bp (996 high quality bases) assembled on 2008-05-23
> FMO02744.5prime
CAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATTTGAGGGGC
TTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTCAGCGTCTA
TGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCCCAAATGGC
TGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTGTCGTCAAC
TTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCCAATTCAGA
GACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGCCATAAATA
TACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGGCTCGAAGA
ACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGATTGGACTC
CTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATTCGGCACAC
ACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACGTATTTCTC
AACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTTATGTTCTT
GCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCATGCTGTTTG
TGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATATATGGTTTC
ACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGCATGGTCAG
CAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAAAAACAAGA
CTGGAAAAATGCGACCCATGTGGGAAATGCTGCGACCATTTTTCGCCTTC
GTTTGGCTTTTTGTGATCACTGTAGTCTGGTCGTTTTTTTCGCGAAACGA
TGTGATTAACAGGAGCCACGCATTTTATGGATACTCTATGGCACGATATT
TTCAAATATTGCATGCCGACTGATAGTGGCCCAATGTCGGAAACGCGTTG
CGATGCCTTCAATGTGCTCATGTGGCCACTGACGCCACAGTAGGAGTCTG
CTGTTTTCCCTACTACAGCAGTCTTCGACTAGATCTGACATCGGACACCG
GACGATGGATACTCATGACTAACCATTTTCTCACTTTAGCTCACTGGACT
CACGCTACGGCTGATTCTGAAAGTTGCACACACTTTCCATTTCCCGGCTC
AAGATAGAAATTCAGACGCAATCGGTCGAATATAATCTCACACCGTTCGT
GCGAACTTACACGAATCACTCCC
FMO02744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7149-RC | 2191 | CG7149-RC | 480..1592 | 9..1111 | 5210 | 98.6 | Plus |
| CG7149-RB | 1902 | CG7149-RB | 480..1592 | 9..1111 | 5210 | 98.6 | Plus |
| CG7149-RA | 2467 | CG7149-RA | 480..1592 | 9..1111 | 5210 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7787833..7788091 | 579..321 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 7788151..7788339 | 321..133 | 945 | 100 | Minus |
| 2L | 23513712 | 2L | 7787372..7787552 | 913..734 | 855 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7787613..7787768 | 733..578 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 7787113..7787304 | 1097..914 | 505 | 92.7 | Minus |
| 2L | 23513712 | 2L | 7788399..7788469 | 134..64 | 355 | 100 | Minus |
| 2L | 23513712 | 2L | 7790022..7790078 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:25:46 has no hits.
FMO02744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:21 Download gff for
FMO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7149-RA | 480..1598 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:16 Download gff for
FMO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7149-RA | 480..1598 | 9..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:23 Download gff for
FMO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7149-RA | 480..1598 | 9..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:23 Download gff for
FMO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7787098..7787304 | 914..1111 | 92 | <- | Minus |
| 2L | 7787372..7787552 | 734..913 | 99 | <- | Minus |
| 2L | 7787613..7787767 | 579..733 | 100 | <- | Minus |
| 2L | 7787834..7788090 | 322..578 | 100 | <- | Minus |
| 2L | 7788151..7788337 | 135..321 | 100 | <- | Minus |
| 2L | 7788399..7788467 | 66..134 | 100 | <- | Minus |
| 2L | 7790022..7790078 | 9..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:16 Download gff for
FMO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7787613..7787767 | 579..733 | 100 | <- | Minus |
| arm_2L | 7787372..7787552 | 734..913 | 99 | <- | Minus |
| arm_2L | 7787098..7787304 | 914..1111 | 92 | <- | Minus |
| arm_2L | 7787834..7788090 | 322..578 | 100 | <- | Minus |
| arm_2L | 7788151..7788337 | 135..321 | 100 | <- | Minus |
| arm_2L | 7788399..7788467 | 66..134 | 100 | <- | Minus |
| arm_2L | 7790022..7790078 | 9..65 | 100 | | Minus |
