FMO02745.5prime Sequence
1193 bp (991 high quality bases) assembled on 2008-05-23
> FMO02745.5prime
CAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACCAGCGATGT
CCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTCAAGAAGCA
GGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGTGGATGCCC
GCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCATCTTCGGC
TACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTACGACCGGGA
TCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAGCGCCAATC
CGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGAAGGCCAAC
ACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGATGCCCCCAC
CTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCACCACAAACC
TGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCAAGGTGCAA
ACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTACATTCGCGC
CCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAACCGCAGCC
TCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACATCATGCCT
TACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTCGATAAGTT
CCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCAGGACACTC
TGAAAGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGAGCGATGTA
CACAAGAGACCACGGAGAACGTGCGCATTACCGTGATTCTCTTCTACATG
GGTTGCCGGGAGACGCCTGCTAGTTCGGTCTACTGGTGGCGCTACTGCAT
CCGACTGGAGAACCTCGGCGAGCTGAGCGTGCAGCTGCGCGAGCGCCACT
GGCGCCATTTTCTCACTGTCTGACCCTGAGACGGTGCGCGGAGAGGAGTG
GTGGGCCAGAGCCCATTCTGAGCCCCGCTGCCCGCCTTCAGTACAGCGCA
ATGTGAGCCCTGCAGCTCCCAGCGGCCATATGTGGGCTACCTTCGGCTGG
AAGCGGAAACGATATCTCTTCAATGGCCGAATTCCGCCCTTCTCTTGAGA
CACATCCGCACGACTAGGGACGCCCACCGGTCCGCCCAGGTGC
FMO02745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12162-RA | 1595 | CG12162-RA | 263..1446 | 9..1177 | 5155 | 96.8 | Plus |
| CG12162-RB | 1639 | CG12162-RB | 390..1463 | 119..1177 | 4605 | 96.5 | Plus |
| CG12162-RB | 1639 | CG12162-RB | 227..336 | 9..118 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5468203..5468629 | 119..545 | 2135 | 100 | Plus |
| 3R | 32079331 | 3R | 5468689..5469030 | 546..886 | 1630 | 99.1 | Plus |
| 3R | 32079331 | 3R | 5468040..5468149 | 9..118 | 550 | 100 | Plus |
| 3R | 32079331 | 3R | 5469085..5469301 | 886..1094 | 540 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:23 has no hits.
FMO02745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:23 Download gff for
FMO02745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 241..1446 | 1..1189 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:53 Download gff for
FMO02745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 256..1461 | 1..1189 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:46 Download gff for
FMO02745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 256..1461 | 1..1189 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:46 Download gff for
FMO02745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5468689..5469030 | 546..886 | 99 | -> | Plus |
| 3R | 5468033..5468149 | 1..118 | 96 | -> | Plus |
| 3R | 5468203..5468629 | 119..545 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:53 Download gff for
FMO02745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1293755..1293871 | 1..118 | 96 | -> | Plus |
| arm_3R | 1293925..1294351 | 119..545 | 100 | -> | Plus |
| arm_3R | 1294411..1294752 | 546..886 | 99 | -> | Plus |
