FMO02750.5prime Sequence
1227 bp (1042 high quality bases) assembled on 2008-05-23
> FMO02750.5prime
CAGTCGACATGTCTATTGGGTTTAGGTATAGAGCCAACAATTATGCACGT
CTGATAACCAAATACTTTTGCATCCACATCAAGATCGACATGGAGGCGCC
GGAGTTCAAGGATTTTGCCAAGACAATGGTCGACTTTATAGCCGAATATC
TGGAGAATATACGCGAAAGGCGCGTTCTGCCGGAAGTGAAGCCTGGCTAC
CTGAAGCCATTGATTCCGGATGCTGCGCCCGAGAAGCCGGAGAAGTGGCA
GGATGTGATGCAGGACATCGAGCGAGTCATCATGCCGGGCGTGACACACT
GGCACAGTCCCAAGTTTCATGCCTACTTCCCCACGGCCAACTCGTATCCA
GCGATCGTTGCGGACATGCTGAGTGGAGCGATTGCCTGCATCGGATTCAC
GTGGATCGCCAGTCCCGCGTGCACGGAACTCGAGGTGGTCATGATGGATT
GGCTGGGCAAGATGCTGGAGCTGCCGGCAGAGTTCCTGGCCTGTTCGGGC
GGCAAGGGTGGCGGTGTCATCCAGGGCACGGCCAGTGAGTCCACACTGGT
GGCTCTGCTGGGAGCCAAGGCCAAGAAGTTGAAGGAGGTGAAGGAGCTCC
ATCCGGAGTGGGATGAGCACACCATCTTGGGCAAGTTGGTGGGCTACTGC
TCGGACCAGGCTCACTCATCCGTGGAGCGGGCTGGTCTTCTGGGCGGAGT
AAAGCTCCGTTCCGTGCAGTCCGAGAATCACAGAATGCGTGGTGCTGCCC
TGGAAAAGGCCATCGAACATGATGTGGCCGAGGGTTTGATTCCCTTCTAC
GCGGTGGTCACCCTGGGCACCACCAACTCCTGCGCCTTCGACTACTTGGA
TGAGTGTGGACCGGTGGGAAACAAGCACAATTTGTGGATCCATGTGGACG
CTGCCTATGCCGGATCCGCTTTCATTTGCCCGAGTATCGCAACTGATGAA
GGCATCGAATCAGCAGACTCTTTCAATTTCAATCCACACAATGGATGCTG
TTGAACTTTGACTGCTCGGCATGTGGCTGAGGATCCCAGTTGGGTGGTCA
CGCGGTCATGTGGGACCCTCTTACTGAAGCCCGAATGCAGGATCAGCTTC
GAAATAATCGTCACTGGCCAATTCCATGGACGGCATTCAGAATGGGAGGC
TTGGTCGCCTCGGTTAACGGTCCGAATTCCAGGCCTACACTCGGAACACG
TGACACTTGGCAAGACGATCTCGGGGA
FMO02750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RD | 2797 | CG10697-RD | 991..2135 | 9..1140 | 5170 | 97.6 | Plus |
| Ddc-RC | 2085 | CG10697-RC | 353..1423 | 83..1140 | 4800 | 97.5 | Plus |
| Ddc-RB | 1929 | CG10697-RB | 197..1267 | 83..1140 | 4800 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19117242..19118130 | 1050..168 | 4100 | 99 | Minus |
| 2L | 23513712 | 2L | 19119155..19119316 | 170..9 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:26 has no hits.
FMO02750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:49:30 Download gff for
FMO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10697-RA | 963..2015 | 4..1050 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:56 Download gff for
FMO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 986..2038 | 4..1050 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:48 Download gff for
FMO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 986..2038 | 4..1050 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:48 Download gff for
FMO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19117242..19118128 | 170..1050 | 98 | <- | Minus |
| 2L | 19119156..19119321 | 4..169 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:56 Download gff for
FMO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19117242..19118128 | 170..1050 | 98 | <- | Minus |
| arm_2L | 19119156..19119321 | 4..169 | 98 | | Minus |
